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The map label for this gene is pchR [H]

Identifier: 118579241

GI number: 118579241

Start: 849109

End: 850044

Strand: Direct

Name: pchR [H]

Synonym: Ppro_0803

Alternate gene names: 118579241

Gene position: 849109-850044 (Clockwise)

Preceding gene: 118579236

Following gene: 118579242

Centisome position: 21.19

GC content: 60.26

Gene sequence:

>936_bases
ATGAAGAATGGAAATACGGTCCCGTTGTCGTGGTTTTCTCCGGCCCGGAATTGCTGGGCATTGCAGACGCTTCAGGTTGA
ACTTGTTCAGTCGGCGCGGAGCAGGGGCGATATCCGGTGTGAGGTGGTCACCGAAGACCACTGGCAGGTGATCTTCATGC
TTGAGGGGGAGTTGCAGGAATGTGTTGTAAACGATAATGGATGTCATTTGCAGCAGCTTGCCGGCGAGGAACGGTGCAGC
CTGCGCTATCTGACGCGGGGGATGAGGCTCAACGAGGGCTCGCAGGACAGCGGGGGGGGGCGGCTGCTCATCCGGTTGGC
GTCTCCGGAACTGTTCGGGACAGGGCGGCTCCGACGTGAAGCGGACGAGCTGCAACGGCAGGGAGCGGCGGCGCTCACCA
TTCCTGCCACTCCTCAGATGCTGCGGACCGCCGCCGATATCTTGGCCCATTCCGTCCGTCCCGACAACCTGCTCCCGGTT
ATGTCCGGGGCCCTGGATCTGTTGCGCCAGATCGCCCATTCCCGCGAACTCAGCCGCGTTCCGAGCGCGGACCGGGAAAA
GAGCGCCGTCGACGCGGCCTGCAAATTACTGGAGGCGAGTATGGACAATCCGCCGTCGCTGGAAGAGCTGGCGACCCAGG
TGGGTATGAGCGCGACCCGCTTCAAACAGGCGTTCAGTCGCATCCGGGGAGTACCTCCCTTTGCCTATCTGCGGAATCTG
CGGCTTGAGCGGGCCATGTGCCTCCTGCGGTACGAAGGATTACGGGTCACCGAGGTGGCCCTGGAGGTCGGATACAATAA
TTTCAGTCATTTCGCAAAGATATTCGAAGCGCGTTTTGGAATTGTCCCATCCAGAGTCCGCCGGGAAACTATGGTGAGGC
TTGTAGCGTTACTTTATGGTCTGCACGCGTTAGCACTCTGCGCCGAGATGGTGTAA

Upstream 100 bases:

>100_bases
TTTTACCGGAAAGCTTCGATGGTGCGTGAACGGTTGGTGATGCCGGGACACTTTTTTCCGTCATCCGCCCGTGATGACGG
CGTTGGAAGGAGGGACATTG

Downstream 100 bases:

>100_bases
ACAGGTTAAACATGATTTTGAATTTCGAAAGCAATTGCGGCAACCGATAAGGTGGGAGCGTGGGGTGGGCGCGGTTGCCG
CACCGGCGGACGGGGATAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKNGNTVPLSWFSPARNCWALQTLQVELVQSARSRGDIRCEVVTEDHWQVIFMLEGELQECVVNDNGCHLQQLAGEERCS
LRYLTRGMRLNEGSQDSGGGRLLIRLASPELFGTGRLRREADELQRQGAAALTIPATPQMLRTAADILAHSVRPDNLLPV
MSGALDLLRQIAHSRELSRVPSADREKSAVDAACKLLEASMDNPPSLEELATQVGMSATRFKQAFSRIRGVPPFAYLRNL
RLERAMCLLRYEGLRVTEVALEVGYNNFSHFAKIFEARFGIVPSRVRRETMVRLVALLYGLHALALCAEMV

Sequences:

>Translated_311_residues
MKNGNTVPLSWFSPARNCWALQTLQVELVQSARSRGDIRCEVVTEDHWQVIFMLEGELQECVVNDNGCHLQQLAGEERCS
LRYLTRGMRLNEGSQDSGGGRLLIRLASPELFGTGRLRREADELQRQGAAALTIPATPQMLRTAADILAHSVRPDNLLPV
MSGALDLLRQIAHSRELSRVPSADREKSAVDAACKLLEASMDNPPSLEELATQVGMSATRFKQAFSRIRGVPPFAYLRNL
RLERAMCLLRYEGLRVTEVALEVGYNNFSHFAKIFEARFGIVPSRVRRETMVRLVALLYGLHALALCAEMV
>Mature_311_residues
MKNGNTVPLSWFSPARNCWALQTLQVELVQSARSRGDIRCEVVTEDHWQVIFMLEGELQECVVNDNGCHLQQLAGEERCS
LRYLTRGMRLNEGSQDSGGGRLLIRLASPELFGTGRLRREADELQRQGAAALTIPATPQMLRTAADILAHSVRPDNLLPV
MSGALDLLRQIAHSRELSRVPSADREKSAVDAACKLLEASMDNPPSLEELATQVGMSATRFKQAFSRIRGVPPFAYLRNL
RLERAMCLLRYEGLRVTEVALEVGYNNFSHFAKIFEARFGIVPSRVRRETMVRLVALLYGLHALALCAEMV

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=96, Percent_Identity=30.2083333333333, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34732; Mature: 34732

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNGNTVPLSWFSPARNCWALQTLQVELVQSARSRGDIRCEVVTEDHWQVIFMLEGELQE
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCCHHH
CVVNDNGCHLQQLAGEERCSLRYLTRGMRLNEGSQDSGGGRLLIRLASPELFGTGRLRRE
HHCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEECCCHHHHH
ADELQRQGAAALTIPATPQMLRTAADILAHSVRPDNLLPVMSGALDLLRQIAHSRELSRV
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PSADREKSAVDAACKLLEASMDNPPSLEELATQVGMSATRFKQAFSRIRGVPPFAYLRNL
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH
RLERAMCLLRYEGLRVTEVALEVGYNNFSHFAKIFEARFGIVPSRVRRETMVRLVALLYG
HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LHALALCAEMV
HHHHHHHHHCC
>Mature Secondary Structure
MKNGNTVPLSWFSPARNCWALQTLQVELVQSARSRGDIRCEVVTEDHWQVIFMLEGELQE
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCCHHH
CVVNDNGCHLQQLAGEERCSLRYLTRGMRLNEGSQDSGGGRLLIRLASPELFGTGRLRRE
HHCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEECCCHHHHH
ADELQRQGAAALTIPATPQMLRTAADILAHSVRPDNLLPVMSGALDLLRQIAHSRELSRV
HHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PSADREKSAVDAACKLLEASMDNPPSLEELATQVGMSATRFKQAFSRIRGVPPFAYLRNL
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH
RLERAMCLLRYEGLRVTEVALEVGYNNFSHFAKIFEARFGIVPSRVRRETMVRLVALLYG
HHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LHALALCAEMV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]