| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is ppdK [H]
Identifier: 118579081
GI number: 118579081
Start: 679132
End: 681870
Strand: Direct
Name: ppdK [H]
Synonym: Ppro_0642
Alternate gene names: 118579081
Gene position: 679132-681870 (Clockwise)
Preceding gene: 118579080
Following gene: 118579082
Centisome position: 16.94
GC content: 59.44
Gene sequence:
>2739_bases ATGACGAGAAAATGGGTGTACCTGTTCGATGAACTGGACCAGGCATCGAGCTACGTCGGTGGAAAATGGGATAATGTGCG GGGGTTGTTGGGGGGCAAGGGCGCAAACCTGGCGGAAATGACCAGGATCGGCCTGCCGGTGCCTCCCGGATTTACCGTCA CGACCGAGGCTTGTAACGCCTATCTGGACGCTGGAATGGCTTTCCCCGAAGATATGTGGCAGCAGGAACTCGCCGCACTG GCCGAGGTGGAGAAGAAGACCGGCAAGAAATTCGGCGATCCGGGCAACCCCCTGCTTGTATCCTGCCGCTCAGGGGCCAA GTTCTCCATGCCGGGCATGATGGATACGGTTCTCAACATCGGGCTGAACGAGGAGACAGTCCAGAGCATGATCAAAAGCA CGGGGGATGCGCGCTTTGTCTATGATTCCTACCGCCGGCTGATACAGATGTTCGGATCCGTGGTAATGGGTGTTCCCGAT GAACCGTTCGAGGAGGTCATTACCGAAGTACGTAAAAAACGCCGGGTAAAGAGCGACGCCGAACTGACCGCCGAAGATTG GATGAGCATTGGCGAACGCTTCAGGGATATTTTCCGCCGCTACAACCGCATAGATTTTCCGACCGATCCGCTGGAACAGC TGCGGTTGGCCACCGAGGCGGTATTCAAATCCTGGAACGGCAAGCGGGCTATCGACTACCGTAACGCTGCAAAAATAGCC CATGACCTTGGCACGGCGGTGAACATCCAGACCATGGTCTTTGGCAATATGGGAAACGACAGCGCCACCGGTGTTGCCAT GACACGCAATGCGACCACGGGGGAGAAGAGGATCGAGGGCGACTACCTGATTAACGCCCAGGGAGAGGATGTTGTTGCCG GTATCCGTGCCACCGACCCGGTGGAGAAGATGGCCCAGACCATGCCGGCATCCTGGGAACAGTTTGTTGAAATCACCCGT ATCCTCGAAAAGCATTACCGCAACATGCAGGACGTGGAATTCACCGTGGAACGGGGCAAGCTCTGGATGCTGCAGACCCG CGATGGCAAACGCACAGCCCAGGCTTCCGTCCGCATAGCCGTCGAGATGGTGGACGAGGGGCTTATATCCAGCGAGGAAG CGGTCATGCGCGTGACTCCCGAACAGGTGGACTTCTTCCTGCATCCCCAGTTCAATCCGCACTCAAAGAAAGCCGCCGGT GCGGAGGGGCGTCTGCTGGCCAGCGGTCTGAACGTGTCTCCCGGAGCCGCCGTGGGCATGGTTGCCTTTGACGCTGACCT TGCCGAAGCCTGGGCGAAGAAGGAGGGGAAAAAGGTTGTCATGGTCAGGCCCGAAACAAAGCCAGACGACGTGCATGGCA TGCTCGCAGCCGAAGGGATCCTGACCAGTCGCGGCGGACGCACGAGCCATGCGGCCCTCGTCGCACGCCAGTTCGGCAAG CCGGCCGTGGTCGGTGTTGCCGCCCTTGAGATAGACATGTCCCAGCGCCTGATGATCGTGAAAGAGCAGGTGATCGAGGA AGGGGACTGGATATCCATAGACGGGTCTACCGGTGAGGTGTTCCTGGGTCGGCTGGATACGATGGTGCCGGATATCTCTG ATCCATGGCTGAAGCGCCTGCTCGTCATGGCCGACAGTTTCCGTCGACTGGGCGTCTGGGCCAACGCAGACTACCCCGAT GACGCCAAGCGCGCGCGGGAGTACGGTGCCGGCGGCATCGGCCTTTGCCGCACCGAGCATATGTTTTTTCAGAGCGAGCG GCTTTCCTTTGTGCAGAAGATGATCATGACCAACCAGCCGACGGAGCGCCGCGAGGCGCTGGATGCGTTGCTCCCCTTCC AGCGAGAGGATTTCATCGGCCTGTTCCGTGCCATGCACGGTCTGCCGGTGATTATCCGCCTTATCGATCCTCCTCTGCAT GAGTTTCTGCCGAACTACGAGTCGCTGATGACCGGGCTTGCCGACAACAAGATCCGTCTGCTGCGCGCCGCCAACCTGCA CGAGATTGACGAACTGCTGCGCAAGATCGAGGATGACGAACATGTTCTCGGCCGCGTGCAGGACCTTCATGAGGCCAACC CCATGCTCGGCCTGCGCGGTGTGCGTCTGGGTATCATGATGCCGGACCTGACCCAGATGCAGGTGCGGGCTATTTTCGAG GCTGCCTGCCAATGCACGAAAGAGGGGATCGATGTGCATCCCGAGGTGATGATTCCGCTCACCAGCCATGTCAATGAACT GAAGGTGCAGCGCGAGGCGCTGGAGGAGGTGGCCCGACAGGTGCTTGAGGAGCAGGGTGTCGTCATCGACTACAAGTTCG GCACGATGATTGAGATACCGCGCGCGGCCCTGACCGCCGACGAGATCGCCGGTCATGCCCAGTTCTTCTCATTCGGTACC AACGACCTGACCCAGACCACCTTTGGCATCAGCCGTGACGATGCAGAGAAAGGGTTTCTTATCGATTACATCCAGTCCGG CATCCTCCCGGATAACCCGTTTGAGACGATCGACCGGAATGGTGTGGCGCAGTTGATGGCAATCGGCGTCGAGCGTGGTA GGAAGACCCGTCCCGGGCTTGAAGTCGGCATCTGTGGCGAGCATGGGGGCGATCCCAAGTCCATTGCCATCTGTCACGAA CTGGGGCTCAATTACGTCAGCTGTTCACCGTTCCGGGTGCCGATTGCGCGCCTGGCGGCTGCCCAGGCGGCACTTCGTGA GAGGATGACGGATGGCTAG
Upstream 100 bases:
>100_bases GTGGTTGCATAATGGAAAATCAACGTTACAGTTGTGAATGAGTTTTTCCTAACTGCAAAGGAATGAGTACGCCAAATACT GCTACGGAGGCATGAATGCT
Downstream 100 bases:
>100_bases GTGTTGAAGCCGTCAATTACCCGGTTCTGGCTTACATCTGCCTGCTGTTGGCGCTACAGGGACTATGGGGGGAACCTGGC TGGGATTCTCTGCCTGCAAC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 912; Mature: 911
Protein sequence:
>912_residues MTRKWVYLFDELDQASSYVGGKWDNVRGLLGGKGANLAEMTRIGLPVPPGFTVTTEACNAYLDAGMAFPEDMWQQELAAL AEVEKKTGKKFGDPGNPLLVSCRSGAKFSMPGMMDTVLNIGLNEETVQSMIKSTGDARFVYDSYRRLIQMFGSVVMGVPD EPFEEVITEVRKKRRVKSDAELTAEDWMSIGERFRDIFRRYNRIDFPTDPLEQLRLATEAVFKSWNGKRAIDYRNAAKIA HDLGTAVNIQTMVFGNMGNDSATGVAMTRNATTGEKRIEGDYLINAQGEDVVAGIRATDPVEKMAQTMPASWEQFVEITR ILEKHYRNMQDVEFTVERGKLWMLQTRDGKRTAQASVRIAVEMVDEGLISSEEAVMRVTPEQVDFFLHPQFNPHSKKAAG AEGRLLASGLNVSPGAAVGMVAFDADLAEAWAKKEGKKVVMVRPETKPDDVHGMLAAEGILTSRGGRTSHAALVARQFGK PAVVGVAALEIDMSQRLMIVKEQVIEEGDWISIDGSTGEVFLGRLDTMVPDISDPWLKRLLVMADSFRRLGVWANADYPD DAKRAREYGAGGIGLCRTEHMFFQSERLSFVQKMIMTNQPTERREALDALLPFQREDFIGLFRAMHGLPVIIRLIDPPLH EFLPNYESLMTGLADNKIRLLRAANLHEIDELLRKIEDDEHVLGRVQDLHEANPMLGLRGVRLGIMMPDLTQMQVRAIFE AACQCTKEGIDVHPEVMIPLTSHVNELKVQREALEEVARQVLEEQGVVIDYKFGTMIEIPRAALTADEIAGHAQFFSFGT NDLTQTTFGISRDDAEKGFLIDYIQSGILPDNPFETIDRNGVAQLMAIGVERGRKTRPGLEVGICGEHGGDPKSIAICHE LGLNYVSCSPFRVPIARLAAAQAALRERMTDG
Sequences:
>Translated_912_residues MTRKWVYLFDELDQASSYVGGKWDNVRGLLGGKGANLAEMTRIGLPVPPGFTVTTEACNAYLDAGMAFPEDMWQQELAAL AEVEKKTGKKFGDPGNPLLVSCRSGAKFSMPGMMDTVLNIGLNEETVQSMIKSTGDARFVYDSYRRLIQMFGSVVMGVPD EPFEEVITEVRKKRRVKSDAELTAEDWMSIGERFRDIFRRYNRIDFPTDPLEQLRLATEAVFKSWNGKRAIDYRNAAKIA HDLGTAVNIQTMVFGNMGNDSATGVAMTRNATTGEKRIEGDYLINAQGEDVVAGIRATDPVEKMAQTMPASWEQFVEITR ILEKHYRNMQDVEFTVERGKLWMLQTRDGKRTAQASVRIAVEMVDEGLISSEEAVMRVTPEQVDFFLHPQFNPHSKKAAG AEGRLLASGLNVSPGAAVGMVAFDADLAEAWAKKEGKKVVMVRPETKPDDVHGMLAAEGILTSRGGRTSHAALVARQFGK PAVVGVAALEIDMSQRLMIVKEQVIEEGDWISIDGSTGEVFLGRLDTMVPDISDPWLKRLLVMADSFRRLGVWANADYPD DAKRAREYGAGGIGLCRTEHMFFQSERLSFVQKMIMTNQPTERREALDALLPFQREDFIGLFRAMHGLPVIIRLIDPPLH EFLPNYESLMTGLADNKIRLLRAANLHEIDELLRKIEDDEHVLGRVQDLHEANPMLGLRGVRLGIMMPDLTQMQVRAIFE AACQCTKEGIDVHPEVMIPLTSHVNELKVQREALEEVARQVLEEQGVVIDYKFGTMIEIPRAALTADEIAGHAQFFSFGT NDLTQTTFGISRDDAEKGFLIDYIQSGILPDNPFETIDRNGVAQLMAIGVERGRKTRPGLEVGICGEHGGDPKSIAICHE LGLNYVSCSPFRVPIARLAAAQAALRERMTDG >Mature_911_residues TRKWVYLFDELDQASSYVGGKWDNVRGLLGGKGANLAEMTRIGLPVPPGFTVTTEACNAYLDAGMAFPEDMWQQELAALA EVEKKTGKKFGDPGNPLLVSCRSGAKFSMPGMMDTVLNIGLNEETVQSMIKSTGDARFVYDSYRRLIQMFGSVVMGVPDE PFEEVITEVRKKRRVKSDAELTAEDWMSIGERFRDIFRRYNRIDFPTDPLEQLRLATEAVFKSWNGKRAIDYRNAAKIAH DLGTAVNIQTMVFGNMGNDSATGVAMTRNATTGEKRIEGDYLINAQGEDVVAGIRATDPVEKMAQTMPASWEQFVEITRI LEKHYRNMQDVEFTVERGKLWMLQTRDGKRTAQASVRIAVEMVDEGLISSEEAVMRVTPEQVDFFLHPQFNPHSKKAAGA EGRLLASGLNVSPGAAVGMVAFDADLAEAWAKKEGKKVVMVRPETKPDDVHGMLAAEGILTSRGGRTSHAALVARQFGKP AVVGVAALEIDMSQRLMIVKEQVIEEGDWISIDGSTGEVFLGRLDTMVPDISDPWLKRLLVMADSFRRLGVWANADYPDD AKRAREYGAGGIGLCRTEHMFFQSERLSFVQKMIMTNQPTERREALDALLPFQREDFIGLFRAMHGLPVIIRLIDPPLHE FLPNYESLMTGLADNKIRLLRAANLHEIDELLRKIEDDEHVLGRVQDLHEANPMLGLRGVRLGIMMPDLTQMQVRAIFEA ACQCTKEGIDVHPEVMIPLTSHVNELKVQREALEEVARQVLEEQGVVIDYKFGTMIEIPRAALTADEIAGHAQFFSFGTN DLTQTTFGISRDDAEKGFLIDYIQSGILPDNPFETIDRNGVAQLMAIGVERGRKTRPGLEVGICGEHGGDPKSIAICHEL GLNYVSCSPFRVPIARLAAAQAALRERMTDG
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=735, Percent_Identity=25.4421768707483, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI1788756, Length=452, Percent_Identity=24.3362831858407, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1789193, Length=444, Percent_Identity=22.972972972973, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI48994992, Length=219, Percent_Identity=30.5936073059361, Blast_Score=77, Evalue=7e-15, Organism=Escherichia coli, GI1788726, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 101346; Mature: 101215
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKWVYLFDELDQASSYVGGKWDNVRGLLGGKGANLAEMTRIGLPVPPGFTVTTEACNA CCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEHHHHHH YLDAGMAFPEDMWQQELAALAEVEKKTGKKFGDPGNPLLVSCRSGAKFSMPGMMDTVLNI HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHC GLNEETVQSMIKSTGDARFVYDSYRRLIQMFGSVVMGVPDEPFEEVITEVRKKRRVKSDA CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC ELTAEDWMSIGERFRDIFRRYNRIDFPTDPLEQLRLATEAVFKSWNGKRAIDYRNAAKIA CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHH HDLGTAVNIQTMVFGNMGNDSATGVAMTRNATTGEKRIEGDYLINAQGEDVVAGIRATDP HHHCCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCCH VEKMAQTMPASWEQFVEITRILEKHYRNMQDVEFTVERGKLWMLQTRDGKRTAQASVRIA HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHH VEMVDEGLISSEEAVMRVTPEQVDFFLHPQFNPHSKKAAGAEGRLLASGLNVSPGAAVGM HHHHHCCCCCCCCHHEEECHHHCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEE VAFDADLAEAWAKKEGKKVVMVRPETKPDDVHGMLAAEGILTSRGGRTSHAALVARQFGK EEECHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCC PAVVGVAALEIDMSQRLMIVKEQVIEEGDWISIDGSTGEVFLGRLDTMVPDISDPWLKRL CCEEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHH LVMADSFRRLGVWANADYPDDAKRAREYGAGGIGLCRTEHMFFQSERLSFVQKMIMTNQP HHHHHHHHHCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC TERREALDALLPFQREDFIGLFRAMHGLPVIIRLIDPPLHEFLPNYESLMTGLADNKIRL HHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCHHHHHHHCCCCCEEE LRAANLHEIDELLRKIEDDEHVLGRVQDLHEANPMLGLRGVRLGIMMPDLTQMQVRAIFE EHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHH AACQCTKEGIDVHPEVMIPLTSHVNELKVQREALEEVARQVLEEQGVVIDYKFGTMIEIP HHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECC RAALTADEIAGHAQFFSFGTNDLTQTTFGISRDDAEKGFLIDYIQSGILPDNPFETIDRN HHHHHHHHHHCHHHHEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCC GVAQLMAIGVERGRKTRPGLEVGICGEHGGDPKSIAICHELGLNYVSCSPFRVPIARLAA HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHH AQAALRERMTDG HHHHHHHHCCCC >Mature Secondary Structure TRKWVYLFDELDQASSYVGGKWDNVRGLLGGKGANLAEMTRIGLPVPPGFTVTTEACNA CCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEHHHHHH YLDAGMAFPEDMWQQELAALAEVEKKTGKKFGDPGNPLLVSCRSGAKFSMPGMMDTVLNI HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHC GLNEETVQSMIKSTGDARFVYDSYRRLIQMFGSVVMGVPDEPFEEVITEVRKKRRVKSDA CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC ELTAEDWMSIGERFRDIFRRYNRIDFPTDPLEQLRLATEAVFKSWNGKRAIDYRNAAKIA CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHH HDLGTAVNIQTMVFGNMGNDSATGVAMTRNATTGEKRIEGDYLINAQGEDVVAGIRATDP HHHCCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCEEECCCCCCH VEKMAQTMPASWEQFVEITRILEKHYRNMQDVEFTVERGKLWMLQTRDGKRTAQASVRIA HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHH VEMVDEGLISSEEAVMRVTPEQVDFFLHPQFNPHSKKAAGAEGRLLASGLNVSPGAAVGM HHHHHCCCCCCCCHHEEECHHHCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEE VAFDADLAEAWAKKEGKKVVMVRPETKPDDVHGMLAAEGILTSRGGRTSHAALVARQFGK EEECHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCC PAVVGVAALEIDMSQRLMIVKEQVIEEGDWISIDGSTGEVFLGRLDTMVPDISDPWLKRL CCEEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHH LVMADSFRRLGVWANADYPDDAKRAREYGAGGIGLCRTEHMFFQSERLSFVQKMIMTNQP HHHHHHHHHCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC TERREALDALLPFQREDFIGLFRAMHGLPVIIRLIDPPLHEFLPNYESLMTGLADNKIRL HHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCHHHHHHHCCCCCEEE LRAANLHEIDELLRKIEDDEHVLGRVQDLHEANPMLGLRGVRLGIMMPDLTQMQVRAIFE EHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHH AACQCTKEGIDVHPEVMIPLTSHVNELKVQREALEEVARQVLEEQGVVIDYKFGTMIEIP HHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECC RAALTADEIAGHAQFFSFGTNDLTQTTFGISRDDAEKGFLIDYIQSGILPDNPFETIDRN HHHHHHHHHHCHHHHEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCC GVAQLMAIGVERGRKTRPGLEVGICGEHGGDPKSIAICHELGLNYVSCSPFRVPIARLAA HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHH AQAALRERMTDG HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]