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The map label for this gene is ycfS [H]

Identifier: 118579012

GI number: 118579012

Start: 607982

End: 609307

Strand: Reverse

Name: ycfS [H]

Synonym: Ppro_0573

Alternate gene names: 118579012

Gene position: 609307-607982 (Counterclockwise)

Preceding gene: 118579013

Following gene: 118579011

Centisome position: 15.2

GC content: 60.48

Gene sequence:

>1326_bases
ATGCGCCGAACTGTTCACCACACCTTCGCACACAATTGCTTTTGTCTCTTAGCAGTATGGGGTTTCATCGCATCGCTCCA
GGGATGCGCCGCCATAAAAGGCGCCCAGGAAAAACCACGGTTTGTTCCCGTCCATACTGAGAAGGATATCGAACGGCACA
ATTTTCCGGCCACGAGGGGAGAGGACGTCATTGGCAGACTGGCAATGGTCAGGGTCGAAGAGGGGGATACGCTGGCAGAT
ATCGCCCGGCACTTCGGCCTGGGACTTAACGCCATCAGCGCGGCCAATCCGGGGGTGGACCCATGGGTGCCCAGGGCCGG
GGAGCGCATCCTGCTGCCTTTAAGTTTCATCCTGCCGGACGCCCCGAGGAAGGGCATCGTCATCAACCTGGCCACCATGA
GGCTCTTTCACTACAAGGGGAGCGGGACCGCACAGGTGGTGTCCACCTATCCGGTGGGTGTGGGAGCAGAGGACCGCCCC
ACCCCACCGGGGCCAACGCGTGTGGTGCGCAAGGCAGCCAAGCCCACCTGGCATGTGCCCGCCTCCATCGCCGAGAGGCA
TCGCATGAAAGGGGATATCCTCCCCGCGTCCATTCCGCCGGGTCCTGACAATCCTCTGGGAGAGTACGCGCTCTATCTGG
GCAAGGCGGGGTATCTGATCCATGGCACCAACAAGCCGGCCAGCGTCGGCCTTCAGGCTACGAACGGCTGCATGAGGCTC
TATCCGGAGAACATAAAAACGCTCTTCGGCGAGACTCCGGTCAACACCCCTGTCCTGATTGTGAACCAGCCCTATCTCGT
CGGCCGGCGCGACGGAGCGCTCTACGTGGAAGCCCATGGATCTTCGGAGAGTTCCAACTCCGGAGAACTCCTTAAGATGC
ATGATAAACTGAGAAGCATGGAGAAGAAATCGGCGCGCCCCCTTGACTGGAACAGGATCAAAGAGGTGGAGGCCCGGTCT
CTGGGCATTCCCGTCCCCGTCCCCGTCTCCGGACCGGATCAGGGGAGTAAGAAAGAGCTGCCCGAAACAGTAGAGGTTGA
GCATCCGGGCAACCTGTACGGCAAACCGGCTGTACCGGAAATGACGAAGGATGCCTGGTACGTCCAGGCTGCCTATATGC
GTGACGAGACCGATGCCAGGAGACTGGCCGCCATCATCACCCATCAGGGGCCGCCGATTCCCGCCCGGATAGTGCCGAAG
AGCGGCGGCGGCTATCGTGTCATCGCCGGCCCCTTCAAGGACGGAGACGAAGCCAGGGATGCGGCAAAGCGCATAAAATA
CGATCTGGAGATAGACGCCTTCGTGTTTGACGCCTCCAGGAAGTAG

Upstream 100 bases:

>100_bases
AGCCGGGTTGCCGAAATGTCACCTTTTCTTCGGCCCCGGCTTTTTTGTGTCCGCCGCCCGTTTCATTTTCGATAGTAAAG
AAAGGTACCGTTTTTCGCCC

Downstream 100 bases:

>100_bases
ACAGGTTCCCGGCACACCGGAGAGTGAGCCGGCACCCTGCTGCCGGGAGCAGACGACCGGTGCGATAGCCGGCATGAGTA
CAGAGTGTTAGAAAAAGCCC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MRRTVHHTFAHNCFCLLAVWGFIASLQGCAAIKGAQEKPRFVPVHTEKDIERHNFPATRGEDVIGRLAMVRVEEGDTLAD
IARHFGLGLNAISAANPGVDPWVPRAGERILLPLSFILPDAPRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRP
TPPGPTRVVRKAAKPTWHVPASIAERHRMKGDILPASIPPGPDNPLGEYALYLGKAGYLIHGTNKPASVGLQATNGCMRL
YPENIKTLFGETPVNTPVLIVNQPYLVGRRDGALYVEAHGSSESSNSGELLKMHDKLRSMEKKSARPLDWNRIKEVEARS
LGIPVPVPVSGPDQGSKKELPETVEVEHPGNLYGKPAVPEMTKDAWYVQAAYMRDETDARRLAAIITHQGPPIPARIVPK
SGGGYRVIAGPFKDGDEARDAAKRIKYDLEIDAFVFDASRK

Sequences:

>Translated_441_residues
MRRTVHHTFAHNCFCLLAVWGFIASLQGCAAIKGAQEKPRFVPVHTEKDIERHNFPATRGEDVIGRLAMVRVEEGDTLAD
IARHFGLGLNAISAANPGVDPWVPRAGERILLPLSFILPDAPRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRP
TPPGPTRVVRKAAKPTWHVPASIAERHRMKGDILPASIPPGPDNPLGEYALYLGKAGYLIHGTNKPASVGLQATNGCMRL
YPENIKTLFGETPVNTPVLIVNQPYLVGRRDGALYVEAHGSSESSNSGELLKMHDKLRSMEKKSARPLDWNRIKEVEARS
LGIPVPVPVSGPDQGSKKELPETVEVEHPGNLYGKPAVPEMTKDAWYVQAAYMRDETDARRLAAIITHQGPPIPARIVPK
SGGGYRVIAGPFKDGDEARDAAKRIKYDLEIDAFVFDASRK
>Mature_441_residues
MRRTVHHTFAHNCFCLLAVWGFIASLQGCAAIKGAQEKPRFVPVHTEKDIERHNFPATRGEDVIGRLAMVRVEEGDTLAD
IARHFGLGLNAISAANPGVDPWVPRAGERILLPLSFILPDAPRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRP
TPPGPTRVVRKAAKPTWHVPASIAERHRMKGDILPASIPPGPDNPLGEYALYLGKAGYLIHGTNKPASVGLQATNGCMRL
YPENIKTLFGETPVNTPVLIVNQPYLVGRRDGALYVEAHGSSESSNSGELLKMHDKLRSMEKKSARPLDWNRIKEVEARS
LGIPVPVPVSGPDQGSKKELPETVEVEHPGNLYGKPAVPEMTKDAWYVQAAYMRDETDARRLAAIITHQGPPIPARIVPK
SGGGYRVIAGPFKDGDEARDAAKRIKYDLEIDAFVFDASRK

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=276, Percent_Identity=39.1304347826087, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI1787040, Length=277, Percent_Identity=37.5451263537906, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787968, Length=275, Percent_Identity=38.1818181818182, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1788299, Length=279, Percent_Identity=36.5591397849462, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 48127; Mature: 48127

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTVHHTFAHNCFCLLAVWGFIASLQGCAAIKGAQEKPRFVPVHTEKDIERHNFPATRG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEECCCCCHHHCCCCCCCC
EDVIGRLAMVRVEEGDTLADIARHFGLGLNAISAANPGVDPWVPRAGERILLPLSFILPD
HHHHCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCC
APRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRPTPPGPTRVVRKAAKPTWHVP
CCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
ASIAERHRMKGDILPASIPPGPDNPLGEYALYLGKAGYLIHGTNKPASVGLQATNGCMRL
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCEECEEECCCEEEE
YPENIKTLFGETPVNTPVLIVNQPYLVGRRDGALYVEAHGSSESSNSGELLKMHDKLRSM
CCHHHHHHHCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
EKKSARPLDWNRIKEVEARSLGIPVPVPVSGPDQGSKKELPETVEVEHPGNLYGKPAVPE
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCCCCC
MTKDAWYVQAAYMRDETDARRLAAIITHQGPPIPARIVPKSGGGYRVIAGPFKDGDEARD
CCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHH
AAKRIKYDLEIDAFVFDASRK
HHHHCEECEEEEEEEEECCCC
>Mature Secondary Structure
MRRTVHHTFAHNCFCLLAVWGFIASLQGCAAIKGAQEKPRFVPVHTEKDIERHNFPATRG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEECCCCCHHHCCCCCCCC
EDVIGRLAMVRVEEGDTLADIARHFGLGLNAISAANPGVDPWVPRAGERILLPLSFILPD
HHHHCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCC
APRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRPTPPGPTRVVRKAAKPTWHVP
CCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
ASIAERHRMKGDILPASIPPGPDNPLGEYALYLGKAGYLIHGTNKPASVGLQATNGCMRL
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCEECEEECCCEEEE
YPENIKTLFGETPVNTPVLIVNQPYLVGRRDGALYVEAHGSSESSNSGELLKMHDKLRSM
CCHHHHHHHCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
EKKSARPLDWNRIKEVEARSLGIPVPVPVSGPDQGSKKELPETVEVEHPGNLYGKPAVPE
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCCCCCCCCC
MTKDAWYVQAAYMRDETDARRLAAIITHQGPPIPARIVPKSGGGYRVIAGPFKDGDEARD
CCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHH
AAKRIKYDLEIDAFVFDASRK
HHHHCEECEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]