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The map label for this gene is ybgF [C]

Identifier: 118578970

GI number: 118578970

Start: 567039

End: 567749

Strand: Reverse

Name: ybgF [C]

Synonym: Ppro_0531

Alternate gene names: 118578970

Gene position: 567749-567039 (Counterclockwise)

Preceding gene: 118578984

Following gene: 118578969

Centisome position: 14.17

GC content: 64.42

Gene sequence:

>711_bases
ATGCCCTTCGGCATCAGAACCGCGGCCTGCGCCGTCTCCTGCCTGGCCCTCACCGGCTGCGCTTCCCACGACCTGATGGT
CAAGCGTCAGACCGAGGCAGAGGCAAAGATTGAGCACCTGATCGAGGCCGATAAGAGAAACAGCCAGCGCATGAACGCCC
TCTCCGGCCAGCTGCAGGAACTGGAACTGCGGCTGCGCGACTCCAACGGCCGCATCAGCCAGTTGCAGGCCTCCATCGGC
GAGATGCAGGTCAAGGGCGAGTCCACAACGCCGAGCCACCCGGAGCCCGCCCCCACGATCGAACTGGTCAACAAAGAGCC
AGCGTCAAAGGGAGGGGAGAGCGGCCCACCCGCCGAATACGTCAAGGCCTTCGGGCTGTACAGCGCCAACAGCTTCAGCG
CTGCAATCCAGGCCTTCCAGGCCTTCCTGGCCAATTCCCCCGGAAGCGACTACACCCCCAACGCCCTCTACTGGATCGGC
GAATGCCACTACACCCTTTCCGACTTCCCCCAAGCAGCGGCGGCATTCAAGAAGCTGGCGGAGGGCTACCCAAAAAGCGC
CAAGGCGCCCGACGCCCTGCTGAAACTGGGCTATACCCAGACAGCCATGAAGCAGCGCGACAGGGCGACCAGAACATTCG
AGAGCCTGATCAGGCAGTACCCCAGCAGTCCGGCCGCCAGCAGGGCGCGTGAGCGCCTGACCGCGCACTGA

Upstream 100 bases:

>100_bases
ATATCGCCCATGCCATTTAAACCTGAAAAGGCAGCTTTCACTTGACAAACCGGGTGACACGGTTTTAATGGTAACGAAAC
GCTCGATATCTGGAGGAAAT

Downstream 100 bases:

>100_bases
CGTGCCCGTCGATTATCCAACCAACTCCAGAGAGGTGCCCGCCATGAAAACCAGATCAGTGATAGTGTTCCTGTTGGCGC
TGACCATGCTGTTACCCGGC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPFGIRTAACAVSCLALTGCASHDLMVKRQTEAEAKIEHLIEADKRNSQRMNALSGQLQELELRLRDSNGRISQLQASIG
EMQVKGESTTPSHPEPAPTIELVNKEPASKGGESGPPAEYVKAFGLYSANSFSAAIQAFQAFLANSPGSDYTPNALYWIG
ECHYTLSDFPQAAAAFKKLAEGYPKSAKAPDALLKLGYTQTAMKQRDRATRTFESLIRQYPSSPAASRARERLTAH

Sequences:

>Translated_236_residues
MPFGIRTAACAVSCLALTGCASHDLMVKRQTEAEAKIEHLIEADKRNSQRMNALSGQLQELELRLRDSNGRISQLQASIG
EMQVKGESTTPSHPEPAPTIELVNKEPASKGGESGPPAEYVKAFGLYSANSFSAAIQAFQAFLANSPGSDYTPNALYWIG
ECHYTLSDFPQAAAAFKKLAEGYPKSAKAPDALLKLGYTQTAMKQRDRATRTFESLIRQYPSSPAASRARERLTAH
>Mature_235_residues
PFGIRTAACAVSCLALTGCASHDLMVKRQTEAEAKIEHLIEADKRNSQRMNALSGQLQELELRLRDSNGRISQLQASIGE
MQVKGESTTPSHPEPAPTIELVNKEPASKGGESGPPAEYVKAFGLYSANSFSAAIQAFQAFLANSPGSDYTPNALYWIGE
CHYTLSDFPQAAAAFKKLAEGYPKSAKAPDALLKLGYTQTAMKQRDRATRTFESLIRQYPSSPAASRARERLTAH

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=202, Percent_Identity=29.7029702970297, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25623; Mature: 25492

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFGIRTAACAVSCLALTGCASHDLMVKRQTEAEAKIEHLIEADKRNSQRMNALSGQLQE
CCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELRLRDSNGRISQLQASIGEMQVKGESTTPSHPEPAPTIELVNKEPASKGGESGPPAEY
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH
VKAFGLYSANSFSAAIQAFQAFLANSPGSDYTPNALYWIGECHYTLSDFPQAAAAFKKLA
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
EGYPKSAKAPDALLKLGYTQTAMKQRDRATRTFESLIRQYPSSPAASRARERLTAH
HCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PFGIRTAACAVSCLALTGCASHDLMVKRQTEAEAKIEHLIEADKRNSQRMNALSGQLQE
CCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LELRLRDSNGRISQLQASIGEMQVKGESTTPSHPEPAPTIELVNKEPASKGGESGPPAEY
HHHHHCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH
VKAFGLYSANSFSAAIQAFQAFLANSPGSDYTPNALYWIGECHYTLSDFPQAAAAFKKLA
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
EGYPKSAKAPDALLKLGYTQTAMKQRDRATRTFESLIRQYPSSPAASRARERLTAH
HCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]