| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is yoaA [C]
Identifier: 118578948
GI number: 118578948
Start: 531830
End: 534361
Strand: Reverse
Name: yoaA [C]
Synonym: Ppro_0509
Alternate gene names: 118578948
Gene position: 534361-531830 (Counterclockwise)
Preceding gene: 118578951
Following gene: 118578947
Centisome position: 13.33
GC content: 66.67
Gene sequence:
>2532_bases ATGGAAACTCACTTCACCGCCGACAGCCGCGCTCTGATGCGCTTCGAGATCGCCCAGGCCAGGGGTAACGAGGTCTTCTT CATCGGTCACACCAACCTGGACGGTGTGGTCTGCGAGGTGGAGGCCATCGCCCGCGGCTCACACCAGGCCGTGCCGGCCA TCCTCTCCCGCGCATCGGGCAGCGACATGGTCATCCACAACCACCCGGGAGGCGACCTGACCCCCTCGGCGGCCGACATG GACATCGCCTCGGTTGCCGGCAACCAGGGGATCGGCTTCGCCATCGTGGACAACGACTGCAGCCGCTGCTACCTGGTGGT CTCCCCCCACAGGGAGCAGAAGGGAGAGCTACTCTCCCTGGAGGAGATCGGCCGGGTCTTCGGCGACGACGGCCTGCTGG CCACAAGCCTCGCGGGGTACGAAAAACGGGACGAGCAGCTGCGCATGGCCCTGACCGTGGCCGAGGCATTCAACCGCGAC CGGGTGGTACTGGTGGAGGCCGGCACCGGCACCGGCAAATCCCTGGCCTACCTGGTTCCCTCCATCCTCTGGGCGGTGCG CAACAACGAGCGGGTGGTCATCTCCACCAACACCATCAACCTGCAGGAGCAGCTGATCCGCAAGGATCTCCCCTTTCTGG CCCGCCACTGCGGGGTCGACTTCAAGGCCGCCCTGATCAAGGGGCGCGGCAACTACGCCTGCCTGCGCAAGCTGGAGGCC GCCGAGGCCGAACCGGGCCTGTTCCCCGATGAATCCTCCACGGAACTGACCGCCATTGTCGAATGGAGCAAGGGTGCCCG GGACGGCTGCCGCAGCGACCTGAGCTTCACCCCCCGCAGCGGGGTCTGGGAGGAGATCTGCTGCGAGGCGGACCAGTGCG GACGCTCGCGCTGCAAGCAATTCAACCGCTGCTTCTTCTACCGGGCGCGGCGCGACGCCTCGGCCGCCCGGATCCTGGTG GTCAACCACGCCCTGCTGCTCTCCGACATCGTACTCAAGCGGGAGAGCGGCTACGATGCCACCGCCATTTTGCCCCCCTT CAGCCGCCTGATCCTGGACGAGGGCCATCACCTGGAGGACGTGGCCACCAGCCACCTGTCGCTGATCATCTCCCGCGGCG CCATCCTCAAGCAGCTGCATCGCCTGGTTCCCTCCAAGGCCAATCGCGCCGGGCTTTTGAACATCCTCTCCAACCGCCTG GCCCGCGACCTGCCCGAATCCATGGAGGGGCTCTACGAAGAGCTCTCCGCCCTGCTGGAGGTGAGCCTGCTCCCCAAGAC CCAAGACGTCGTCCTGCTGACCGAGCAGACCATGGACTGGCTGGCCCTGGCCCTCACCCGGGAAACGGGCGGGGAGGGGC GGGAGCGCAAGCTGCGCATCACCAGCGAGGTGGAGCAGCGCCCCTTCTGGCAGGAGTGCGGCACGCGGTTACGGGCGCTC TCCCATAGCCTGGGCGATTACGTCAGCGGCCTGAGGACACTGGTGCGCCGCTGTGAAGATCTGCCGGAACAGCTTAAAGA GAAGCTGGCCAACCAGATCCTGGACATCGCCGGCATCGAGGGGCGTCTGCAGGCCATGACCGAGGGGTTCTCGTTCATGA TCGGCGACCCGGAGGGGTACTGCCGCTGGATCGAGACCTCCACGGCCCAGCGCGGCCTCCAGGCCCGGCTCTGCGCCGCG CCGCTGGACATCTCCGGCCAGATCAAGCAGAGCATCCTGGACCGCATGAAGACCATCGTCGTCACCTCGGCCACCCTGAC CGTGGGGGGAGAGTTCGGCTACCTCAAGAAGAGGACCGGCTTCAGCCTGCTGGACAAGGGACGACTGGACGAACTGCGCC TGGCTTCCCCCTTCGACTACGCCTCCCAGGTATTCGCTGCTGTCCCGGACGACATGCCCGATCCGACGGCGCCCGGGTTC CGCGAGGCGCTGCAGGAGTCAATCCTGCGCAGCCTGAGCATCTCGCGGGGAGGCGCCTTTGTCCTGTTCACCTCCCATGA CCTGCTGAGGAAAGTCTACTCCTCCCTGGCGCCGGAACTGGCCCGACTGGGGCTGACCGCCCTCAGACAGGGGGAGACCG GACGCCACAGCCTGCTGGCCCGCTTCCGCAAGGAGCAGCACGCCGTGCTGTTCGGCACCGATTCATTCTGGGAGGGGGTG GATGTGAAGGGGGAGGCGCTCAGGCTGGTGATCATCACCAGGCTCCCCTTCCAGGTGCCCACCGAACCGGTACAGCAGGC CCGCTGCGAGCGCATCGACGCCACCGGCGGCAACTCGTTCCGGGAATTCTCCATCCCCCAGGCGGTGATCAAGTTCCGCC AGGGATTCGGACGCCTGATCCGCAGCCGCGAGGACCGAGGGGCGGTGCTGATCCTGGACCGCCGGGTCACCACCAAGGGG TACGGCAAGACCTTCCTGCGCTCCCTGCCGGACACCGAGCTGGTGCGGGGCGCTTCCGACACACTGTTCGCCAGGATGGA GGCGTTCTTCTCCGGTACTACCGAGACAGGTCAGGGAGATCCGTTGCCATGA
Upstream 100 bases:
>100_bases CGTTTCTTGTATCATGGTGCCGCAGATTCAGGCAACGACAAAGGCACCCGGTTTCCCCGGTGCCTTTTTTCGCGGGCTGT GCTATGGTGCGGACCTACCA
Downstream 100 bases:
>100_bases AGCTGCTGAGAAAAATTTTCAGCCCGGTCAAGACGCTGATCGCCATCCAGCTGGTCTGGATCACCCTGGTGGTCTCCTGG ATCTACTGGTTCGTGGGCAA
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 843; Mature: 843
Protein sequence:
>843_residues METHFTADSRALMRFEIAQARGNEVFFIGHTNLDGVVCEVEAIARGSHQAVPAILSRASGSDMVIHNHPGGDLTPSAADM DIASVAGNQGIGFAIVDNDCSRCYLVVSPHREQKGELLSLEEIGRVFGDDGLLATSLAGYEKRDEQLRMALTVAEAFNRD RVVLVEAGTGTGKSLAYLVPSILWAVRNNERVVISTNTINLQEQLIRKDLPFLARHCGVDFKAALIKGRGNYACLRKLEA AEAEPGLFPDESSTELTAIVEWSKGARDGCRSDLSFTPRSGVWEEICCEADQCGRSRCKQFNRCFFYRARRDASAARILV VNHALLLSDIVLKRESGYDATAILPPFSRLILDEGHHLEDVATSHLSLIISRGAILKQLHRLVPSKANRAGLLNILSNRL ARDLPESMEGLYEELSALLEVSLLPKTQDVVLLTEQTMDWLALALTRETGGEGRERKLRITSEVEQRPFWQECGTRLRAL SHSLGDYVSGLRTLVRRCEDLPEQLKEKLANQILDIAGIEGRLQAMTEGFSFMIGDPEGYCRWIETSTAQRGLQARLCAA PLDISGQIKQSILDRMKTIVVTSATLTVGGEFGYLKKRTGFSLLDKGRLDELRLASPFDYASQVFAAVPDDMPDPTAPGF REALQESILRSLSISRGGAFVLFTSHDLLRKVYSSLAPELARLGLTALRQGETGRHSLLARFRKEQHAVLFGTDSFWEGV DVKGEALRLVIITRLPFQVPTEPVQQARCERIDATGGNSFREFSIPQAVIKFRQGFGRLIRSREDRGAVLILDRRVTTKG YGKTFLRSLPDTELVRGASDTLFARMEAFFSGTTETGQGDPLP
Sequences:
>Translated_843_residues METHFTADSRALMRFEIAQARGNEVFFIGHTNLDGVVCEVEAIARGSHQAVPAILSRASGSDMVIHNHPGGDLTPSAADM DIASVAGNQGIGFAIVDNDCSRCYLVVSPHREQKGELLSLEEIGRVFGDDGLLATSLAGYEKRDEQLRMALTVAEAFNRD RVVLVEAGTGTGKSLAYLVPSILWAVRNNERVVISTNTINLQEQLIRKDLPFLARHCGVDFKAALIKGRGNYACLRKLEA AEAEPGLFPDESSTELTAIVEWSKGARDGCRSDLSFTPRSGVWEEICCEADQCGRSRCKQFNRCFFYRARRDASAARILV VNHALLLSDIVLKRESGYDATAILPPFSRLILDEGHHLEDVATSHLSLIISRGAILKQLHRLVPSKANRAGLLNILSNRL ARDLPESMEGLYEELSALLEVSLLPKTQDVVLLTEQTMDWLALALTRETGGEGRERKLRITSEVEQRPFWQECGTRLRAL SHSLGDYVSGLRTLVRRCEDLPEQLKEKLANQILDIAGIEGRLQAMTEGFSFMIGDPEGYCRWIETSTAQRGLQARLCAA PLDISGQIKQSILDRMKTIVVTSATLTVGGEFGYLKKRTGFSLLDKGRLDELRLASPFDYASQVFAAVPDDMPDPTAPGF REALQESILRSLSISRGGAFVLFTSHDLLRKVYSSLAPELARLGLTALRQGETGRHSLLARFRKEQHAVLFGTDSFWEGV DVKGEALRLVIITRLPFQVPTEPVQQARCERIDATGGNSFREFSIPQAVIKFRQGFGRLIRSREDRGAVLILDRRVTTKG YGKTFLRSLPDTELVRGASDTLFARMEAFFSGTTETGQGDPLP >Mature_843_residues METHFTADSRALMRFEIAQARGNEVFFIGHTNLDGVVCEVEAIARGSHQAVPAILSRASGSDMVIHNHPGGDLTPSAADM DIASVAGNQGIGFAIVDNDCSRCYLVVSPHREQKGELLSLEEIGRVFGDDGLLATSLAGYEKRDEQLRMALTVAEAFNRD RVVLVEAGTGTGKSLAYLVPSILWAVRNNERVVISTNTINLQEQLIRKDLPFLARHCGVDFKAALIKGRGNYACLRKLEA AEAEPGLFPDESSTELTAIVEWSKGARDGCRSDLSFTPRSGVWEEICCEADQCGRSRCKQFNRCFFYRARRDASAARILV VNHALLLSDIVLKRESGYDATAILPPFSRLILDEGHHLEDVATSHLSLIISRGAILKQLHRLVPSKANRAGLLNILSNRL ARDLPESMEGLYEELSALLEVSLLPKTQDVVLLTEQTMDWLALALTRETGGEGRERKLRITSEVEQRPFWQECGTRLRAL SHSLGDYVSGLRTLVRRCEDLPEQLKEKLANQILDIAGIEGRLQAMTEGFSFMIGDPEGYCRWIETSTAQRGLQARLCAA PLDISGQIKQSILDRMKTIVVTSATLTVGGEFGYLKKRTGFSLLDKGRLDELRLASPFDYASQVFAAVPDDMPDPTAPGF REALQESILRSLSISRGGAFVLFTSHDLLRKVYSSLAPELARLGLTALRQGETGRHSLLARFRKEQHAVLFGTDSFWEGV DVKGEALRLVIITRLPFQVPTEPVQQARCERIDATGGNSFREFSIPQAVIKFRQGFGRLIRSREDRGAVLILDRRVTTKG YGKTFLRSLPDTELVRGASDTLFARMEAFFSGTTETGQGDPLP
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=277, Percent_Identity=36.8231046931408, Blast_Score=177, Evalue=3e-45, Organism=Escherichia coli, GI1787018, Length=255, Percent_Identity=31.3725490196078, Blast_Score=106, Evalue=6e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 93153; Mature: 93153
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METHFTADSRALMRFEIAQARGNEVFFIGHTNLDGVVCEVEAIARGSHQAVPAILSRASG CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHCCCCHHHHHHHHCCCC SDMVIHNHPGGDLTPSAADMDIASVAGNQGIGFAIVDNDCSRCYLVVSPHREQKGELLSL CCEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEECH EEIGRVFGDDGLLATSLAGYEKRDEQLRMALTVAEAFNRDRVVLVEAGTGTGKSLAYLVP HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH SILWAVRNNERVVISTNTINLQEQLIRKDLPFLARHCGVDFKAALIKGRGNYACLRKLEA HHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHHCCCCEEEHEEECCCCHHHHHHHHH AEAEPGLFPDESSTELTAIVEWSKGARDGCRSDLSFTPRSGVWEEICCEADQCGRSRCKQ CCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH FNRCFFYRARRDASAARILVVNHALLLSDIVLKRESGYDATAILPPFSRLILDEGHHLED HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHCCCCCHHH VATSHLSLIISRGAILKQLHRLVPSKANRAGLLNILSNRLARDLPESMEGLYEELSALLE HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH VSLLPKTQDVVLLTEQTMDWLALALTRETGGEGRERKLRITSEVEQRPFWQECGTRLRAL HHCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCHHHHHHHHHHH SHSLGDYVSGLRTLVRRCEDLPEQLKEKLANQILDIAGIEGRLQAMTEGFSFMIGDPEGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCHH CRWIETSTAQRGLQARLCAAPLDISGQIKQSILDRMKTIVVTSATLTVGGEFGYLKKRTG EEEEEHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC FSLLDKGRLDELRLASPFDYASQVFAAVPDDMPDPTAPGFREALQESILRSLSISRGGAF CHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE VLFTSHDLLRKVYSSLAPELARLGLTALRQGETGRHSLLARFRKEQHAVLFGTDSFWEGV EEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCCC DVKGEALRLVIITRLPFQVPTEPVQQARCERIDATGGNSFREFSIPQAVIKFRQGFGRLI CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH RSREDRGAVLILDRRVTTKGYGKTFLRSLPDTELVRGASDTLFARMEAFFSGTTETGQGD HCCCCCCEEEEEECCCCCCCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCC PLP CCC >Mature Secondary Structure METHFTADSRALMRFEIAQARGNEVFFIGHTNLDGVVCEVEAIARGSHQAVPAILSRASG CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHCCCCHHHHHHHHCCCC SDMVIHNHPGGDLTPSAADMDIASVAGNQGIGFAIVDNDCSRCYLVVSPHREQKGELLSL CCEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEECH EEIGRVFGDDGLLATSLAGYEKRDEQLRMALTVAEAFNRDRVVLVEAGTGTGKSLAYLVP HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH SILWAVRNNERVVISTNTINLQEQLIRKDLPFLARHCGVDFKAALIKGRGNYACLRKLEA HHHHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHHCCCCEEEHEEECCCCHHHHHHHHH AEAEPGLFPDESSTELTAIVEWSKGARDGCRSDLSFTPRSGVWEEICCEADQCGRSRCKQ CCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH FNRCFFYRARRDASAARILVVNHALLLSDIVLKRESGYDATAILPPFSRLILDEGHHLED HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHCCCCCHHH VATSHLSLIISRGAILKQLHRLVPSKANRAGLLNILSNRLARDLPESMEGLYEELSALLE HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH VSLLPKTQDVVLLTEQTMDWLALALTRETGGEGRERKLRITSEVEQRPFWQECGTRLRAL HHCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCHHHHHHHHHHH SHSLGDYVSGLRTLVRRCEDLPEQLKEKLANQILDIAGIEGRLQAMTEGFSFMIGDPEGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCHH CRWIETSTAQRGLQARLCAAPLDISGQIKQSILDRMKTIVVTSATLTVGGEFGYLKKRTG EEEEEHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC FSLLDKGRLDELRLASPFDYASQVFAAVPDDMPDPTAPGFREALQESILRSLSISRGGAF CHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE VLFTSHDLLRKVYSSLAPELARLGLTALRQGETGRHSLLARFRKEQHAVLFGTDSFWEGV EEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCCC DVKGEALRLVIITRLPFQVPTEPVQQARCERIDATGGNSFREFSIPQAVIKFRQGFGRLI CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHH RSREDRGAVLILDRRVTTKGYGKTFLRSLPDTELVRGASDTLFARMEAFFSGTTETGQGD HCCCCCCEEEEEECCCCCCCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCC PLP CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]