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The map label for this gene is oprF [H]

Identifier: 118578838

GI number: 118578838

Start: 406089

End: 408152

Strand: Reverse

Name: oprF [H]

Synonym: Ppro_0396

Alternate gene names: 118578838

Gene position: 408152-406089 (Counterclockwise)

Preceding gene: 118578839

Following gene: 118578837

Centisome position: 10.18

GC content: 58.82

Gene sequence:

>2064_bases
ATGTTACTCAAGAGAATGTATGCGCTGTTGACAACCGTGACACTGCTGTTCGCCAGTGGATCTGTTTTCGCGGCGGACAC
GGGTGTCCTGGAGATTCGCTCCACCAGAACCGGGGCAACCGTGGCAGTGGAGCGGGCCATCAAGGAGGGACAGGTGCTGG
TGAGCGCCACCGACGCGGCCAAGAATCCGCTCATGGGGCTGACCGCCAAGGATTTGAGCATAAGCCAGGCAGGAGTTGCG
GGCAGGATCATCTCGGTGAAGCCGATTACCGAGAGCCAGGAGGTGACCCGCCACATCGTCCTGATGCTGGACAACTCCTT
TTCCATGTACGAGCGCAATGCCATTAAGGCGCTGCTCGCTGGCCTTGACAAGGTGTTCAAGATCGTCAGGCCGATCGACA
AGGTCTACCTGGTTATTTTTGACAACAAACTGACCACCAGCGTGGGCGGACGGCAACTGCGCGTGCACTCCTTCACGTCC
AGCAACCCTGATGAGTTGCGGGAGTTTGCCAGCAAGGCCTACAGCCAGCAGGGACTGACAGGGACGACCGTACTGTACGA
AGGAATGCTGGCCGGACTGGATATCATCCGAAAGATACCTGCCACGGACCCGAGAATCATGGTGGTCTTTTCCGACGGTG
AAGACCTGAACAGCGCCCTGAAGCCGGAGGACGTCCAGAAGGCGACCCAGGGAATGGGCCGCTTCAACGCCTACGCCATC
GATTACATGCCGGGCTATGCGACCAGTAAATTTCTGACCGGCTTTGCCACCCAGAACAACGGCCAGATATGGAAGGCCAC
GGCGGAGGACAATCTCGTCCCGATCTTCGAAAGCGTTGCCTCGCAACTGCAGCACTACTATGTCGTCAGCTACGACTTCG
TGCCCACCGGTACCGTTGCCGTTGCCACGTCCACGCTGAACATCGAGGAGATCAAGACCATCGACTCCTCACCCCTGCTG
GCTCATATCTACTTCGACAAGGGGATGGGCGAGATTGGCGACACGTATGTCCGTTTCCACGAGGCCAGTGCAACGGAGGG
ATTCGACGAGCAGACCTTCCGTGACACCACCGAAAAGTACCACCAGATCCTGAACATCATCGGCAAGAGACTGGCCGACA
CCCCGGGAGCCACCATAACCCTGGTTGGCTGCAACGACAACAGCGGCGCGGAAAAAGGGAAGACAGGGCTCTCCACCAGG
CGGGCGGAAGCGGTGAAAACCTATCTGGGGACGATCTGGAACATCGCTCCCGAGCGGATCAGGATCGAAGCCCGCAACCT
GCCGAAGATGCCCAGTTCCAGCAGTTCGCAGGAAGGACAGGCCGAAAACCGCCGCGTGGAGATAGTAAGCAACGACACGG
CCATACTCGCCCCGATCCGCAGCGTCTACGTTTCCGGCAAGGCTGATGCCTCTGAACTGGCGATAACGCCAAAGCTGAGC
TCGACCCATGGCGTCTCCGACTGGAAGATTAGTGCCAGCAACGCATCGGGTGCCATTGCCCAGCAGTCCGGCAGCGGGGC
GCTGCCGGAAAAGGTGAGCTTCCCCCTGAAGGAAAAAGATCTCCTGACGATCGGCGCCGGTGGCGACATAATCGTCAAGC
TGGAAATGCAGGACACCAAGGGGCAGCCACTGGTCGTTTCGTCCGAGCCGATCAAGGTCAACTTCAGCCAGGTCAGCCAG
CGCCAGACCCAGAAGAAGGATCAGAATGTTCAGGAGAAGTACGCCCTGATCCTGTTCGATTTCAACAAGGATACCGTCAG
CGGACTCAACCAGGAGATTGTCAACAAGATCGTAACCCGCTTCAAGAGCCTGCCCCAGGCCAGCATGTCGATTGTCGGCC
ACACCGACAACATCGGCTCGGAGAGCTACAACCTCAAGCTCTCCCAGCGTCGTGCGGCAGCGGTCTACAAACTGTTGACA
GCCGCCTATGGCGAACCGGTCGGCGAGCGTATCCGCTTCTCGGGCGTTGGGCAGGGGTCTCCGCTTTTCGACAACCAGAC
GCCCGAAGGACGTGCCTTCAACCGCACGGTGACCATCACGCTGGAGTATCTGAGCGCCGAGTAG

Upstream 100 bases:

>100_bases
CAAGGATCAGGGGTGGATCGAATAACCGCGACGGGAGTCCCCATGACAAGGGGCGGAATCCAAGCCGGACCCCTTCAACC
AGAGGAAAGGAGAATACGTC

Downstream 100 bases:

>100_bases
CCGGAGCAGTTCCAGGAACCCGCGATACAGAATGGCCTGCTCCCGAACGCAGCGTTCCCGGGCAGGCCAGTATCACACTT
CAAGGAGAGTATCTATGAAA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 687

Protein sequence:

>687_residues
MLLKRMYALLTTVTLLFASGSVFAADTGVLEIRSTRTGATVAVERAIKEGQVLVSATDAAKNPLMGLTAKDLSISQAGVA
GRIISVKPITESQEVTRHIVLMLDNSFSMYERNAIKALLAGLDKVFKIVRPIDKVYLVIFDNKLTTSVGGRQLRVHSFTS
SNPDELREFASKAYSQQGLTGTTVLYEGMLAGLDIIRKIPATDPRIMVVFSDGEDLNSALKPEDVQKATQGMGRFNAYAI
DYMPGYATSKFLTGFATQNNGQIWKATAEDNLVPIFESVASQLQHYYVVSYDFVPTGTVAVATSTLNIEEIKTIDSSPLL
AHIYFDKGMGEIGDTYVRFHEASATEGFDEQTFRDTTEKYHQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTGLSTR
RAEAVKTYLGTIWNIAPERIRIEARNLPKMPSSSSSQEGQAENRRVEIVSNDTAILAPIRSVYVSGKADASELAITPKLS
STHGVSDWKISASNASGAIAQQSGSGALPEKVSFPLKEKDLLTIGAGGDIIVKLEMQDTKGQPLVVSSEPIKVNFSQVSQ
RQTQKKDQNVQEKYALILFDFNKDTVSGLNQEIVNKIVTRFKSLPQASMSIVGHTDNIGSESYNLKLSQRRAAAVYKLLT
AAYGEPVGERIRFSGVGQGSPLFDNQTPEGRAFNRTVTITLEYLSAE

Sequences:

>Translated_687_residues
MLLKRMYALLTTVTLLFASGSVFAADTGVLEIRSTRTGATVAVERAIKEGQVLVSATDAAKNPLMGLTAKDLSISQAGVA
GRIISVKPITESQEVTRHIVLMLDNSFSMYERNAIKALLAGLDKVFKIVRPIDKVYLVIFDNKLTTSVGGRQLRVHSFTS
SNPDELREFASKAYSQQGLTGTTVLYEGMLAGLDIIRKIPATDPRIMVVFSDGEDLNSALKPEDVQKATQGMGRFNAYAI
DYMPGYATSKFLTGFATQNNGQIWKATAEDNLVPIFESVASQLQHYYVVSYDFVPTGTVAVATSTLNIEEIKTIDSSPLL
AHIYFDKGMGEIGDTYVRFHEASATEGFDEQTFRDTTEKYHQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTGLSTR
RAEAVKTYLGTIWNIAPERIRIEARNLPKMPSSSSSQEGQAENRRVEIVSNDTAILAPIRSVYVSGKADASELAITPKLS
STHGVSDWKISASNASGAIAQQSGSGALPEKVSFPLKEKDLLTIGAGGDIIVKLEMQDTKGQPLVVSSEPIKVNFSQVSQ
RQTQKKDQNVQEKYALILFDFNKDTVSGLNQEIVNKIVTRFKSLPQASMSIVGHTDNIGSESYNLKLSQRRAAAVYKLLT
AAYGEPVGERIRFSGVGQGSPLFDNQTPEGRAFNRTVTITLEYLSAE
>Mature_687_residues
MLLKRMYALLTTVTLLFASGSVFAADTGVLEIRSTRTGATVAVERAIKEGQVLVSATDAAKNPLMGLTAKDLSISQAGVA
GRIISVKPITESQEVTRHIVLMLDNSFSMYERNAIKALLAGLDKVFKIVRPIDKVYLVIFDNKLTTSVGGRQLRVHSFTS
SNPDELREFASKAYSQQGLTGTTVLYEGMLAGLDIIRKIPATDPRIMVVFSDGEDLNSALKPEDVQKATQGMGRFNAYAI
DYMPGYATSKFLTGFATQNNGQIWKATAEDNLVPIFESVASQLQHYYVVSYDFVPTGTVAVATSTLNIEEIKTIDSSPLL
AHIYFDKGMGEIGDTYVRFHEASATEGFDEQTFRDTTEKYHQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTGLSTR
RAEAVKTYLGTIWNIAPERIRIEARNLPKMPSSSSSQEGQAENRRVEIVSNDTAILAPIRSVYVSGKADASELAITPKLS
STHGVSDWKISASNASGAIAQQSGSGALPEKVSFPLKEKDLLTIGAGGDIIVKLEMQDTKGQPLVVSSEPIKVNFSQVSQ
RQTQKKDQNVQEKYALILFDFNKDTVSGLNQEIVNKIVTRFKSLPQASMSIVGHTDNIGSESYNLKLSQRRAAAVYKLLT
AAYGEPVGERIRFSGVGQGSPLFDNQTPEGRAFNRTVTITLEYLSAE

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=108, Percent_Identity=32.4074074074074, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 74723; Mature: 74723

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50234 VWFA ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKRMYALLTTVTLLFASGSVFAADTGVLEIRSTRTGATVAVERAIKEGQVLVSATDAA
CHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCC
KNPLMGLTAKDLSISQAGVAGRIISVKPITESQEVTRHIVLMLDNSFSMYERNAIKALLA
CCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHEEEEEEECCCCHHHHHHHHHHHHH
GLDKVFKIVRPIDKVYLVIFDNKLTTSVGGRQLRVHSFTSSNPDELREFASKAYSQQGLT
HHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
GTTVLYEGMLAGLDIIRKIPATDPRIMVVFSDGEDLNSALKPEDVQKATQGMGRFNAYAI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHCCCCCCEEEE
DYMPGYATSKFLTGFATQNNGQIWKATAEDNLVPIFESVASQLQHYYVVSYDFVPTGTVA
ECCCCCCHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCEE
VATSTLNIEEIKTIDSSPLLAHIYFDKGMGEIGDTYVRFHEASATEGFDEQTFRDTTEKY
EEEEECCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
HQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTGLSTRRAEAVKTYLGTIWNIAPERI
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
RIEARNLPKMPSSSSSQEGQAENRRVEIVSNDTAILAPIRSVYVSGKADASELAITPKLS
EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHHEEECCCCCCCCEEEECCCC
STHGVSDWKISASNASGAIAQQSGSGALPEKVSFPLKEKDLLTIGAGGDIIVKLEMQDTK
CCCCCCCEEEECCCCCCCEEECCCCCCCCHHCCCCCCCCCEEEEECCCCEEEEEEECCCC
GQPLVVSSEPIKVNFSQVSQRQTQKKDQNVQEKYALILFDFNKDTVSGLNQEIVNKIVTR
CCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCHHHHHHHHHH
FKSLPQASMSIVGHTDNIGSESYNLKLSQRRAAAVYKLLTAAYGEPVGERIRFSGVGQGS
HHHCCCCHHEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
PLFDNQTPEGRAFNRTVTITLEYLSAE
CCCCCCCCCCCEECEEEEEEEEEECCC
>Mature Secondary Structure
MLLKRMYALLTTVTLLFASGSVFAADTGVLEIRSTRTGATVAVERAIKEGQVLVSATDAA
CHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCC
KNPLMGLTAKDLSISQAGVAGRIISVKPITESQEVTRHIVLMLDNSFSMYERNAIKALLA
CCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHEEEEEEECCCCHHHHHHHHHHHHH
GLDKVFKIVRPIDKVYLVIFDNKLTTSVGGRQLRVHSFTSSNPDELREFASKAYSQQGLT
HHHHHHHHHCCCCEEEEEEECCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
GTTVLYEGMLAGLDIIRKIPATDPRIMVVFSDGEDLNSALKPEDVQKATQGMGRFNAYAI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHCCCCCCEEEE
DYMPGYATSKFLTGFATQNNGQIWKATAEDNLVPIFESVASQLQHYYVVSYDFVPTGTVA
ECCCCCCHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEEECCCCCCEE
VATSTLNIEEIKTIDSSPLLAHIYFDKGMGEIGDTYVRFHEASATEGFDEQTFRDTTEKY
EEEEECCHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
HQILNIIGKRLADTPGATITLVGCNDNSGAEKGKTGLSTRRAEAVKTYLGTIWNIAPERI
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
RIEARNLPKMPSSSSSQEGQAENRRVEIVSNDTAILAPIRSVYVSGKADASELAITPKLS
EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHHEEECCCCCCCCEEEECCCC
STHGVSDWKISASNASGAIAQQSGSGALPEKVSFPLKEKDLLTIGAGGDIIVKLEMQDTK
CCCCCCCEEEECCCCCCCEEECCCCCCCCHHCCCCCCCCCEEEEECCCCEEEEEEECCCC
GQPLVVSSEPIKVNFSQVSQRQTQKKDQNVQEKYALILFDFNKDTVSGLNQEIVNKIVTR
CCEEEEECCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCHHHHHHHHHH
FKSLPQASMSIVGHTDNIGSESYNLKLSQRRAAAVYKLLTAAYGEPVGERIRFSGVGQGS
HHHCCCCHHEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
PLFDNQTPEGRAFNRTVTITLEYLSAE
CCCCCCCCCCCEECEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]