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The map label for this gene is ydcP [H]

Identifier: 118578513

GI number: 118578513

Start: 73645

End: 76113

Strand: Direct

Name: ydcP [H]

Synonym: Ppro_0065

Alternate gene names: 118578513

Gene position: 73645-76113 (Clockwise)

Preceding gene: 118578512

Following gene: 118578514

Centisome position: 1.84

GC content: 64.48

Gene sequence:

>2469_bases
ATGCACGTCTCACGTATCATGTCCCGAAAGGGGCATGGTTATTTCACGAAAGATATGGTTCCCATGAACAGTACTGATCA
CAAACCCGAACTGCTGGCTCCGGCCGGCTCCCTGGAGTCCTTCTTCGCCGCCATGGAAAAGGGGGCCGATGCCGTCTATG
CCGGGCTTAGGGATTTTTCCGCCCGGGCCCGGGCCAAAAACTTCAGCCTGTCACAGATGGAACGCATGCTGGCCTATGCC
CATGCCCACGGCAGGAGGATCTACGTCACCCTGAACACCCTGGTCAAGGAACAGGAGCTGCCCCAGCTGGTGGATACCCT
GGCTGCCCTGGCCGGTATGCGGGTGGACGGCCTGATCGTACAGGATCTTGCGGTGGCGCGGCTGGTGCGCCGCCACTTCC
CCACCATCCCGCTGCACGCCTCGACCCAGATGACCGTGCACAACACGCCGGGTGCCAGGGTCTTGCAGGAGTTGGGTTTT
CAGAGGGCGGTGCTGGCGCGGGAACTGGCCATTGACGAGGTGGCGGCAATCGCGGCGGCAACACCGCTGGAGATCGAGGT
GTTCGTCCATGGCGCGCTCTGCTTCTCCATCTCGGGCCAGTGCTTCTTCTCCTCCTATCTGGGGGGGCACAGCGGCAACC
GTGGGCGCTGCGCCCAGCCCTGTCGCAGGCTCTACAGCCACCGCGGCAAGCAGGGGTACTTCTTCTCCACCAACGACCTG
TCGGCCATCGACATGCTGCCGGAGCTGGTCAGGGCGGGAGTCAGGTCGCTGAAGATCGAGGGGCGCATGAAATCGGCCGA
GTATGTGGCCAGCGTGGTGCAGGCCTACCGTCTGGTGCTGGATGCAACCGAGCGCTCCCGCGGTGAGGCGCTCGCGGCTG
CCAAGGGGCTGCTCAAGCACTCCTTCGGCCGCACCCCCACCAAGGGGTTTCTGGCATCCCAGCAGCCGGACGATATCGCC
AACCCCTGGCAGAAGGGGGGCACCGGCCGCTTCGTGGGGCAGATCAAGTCCATCAGGGGAAACCGACTCAGCTTCGAGAC
CCGCGATAGCCTGCATGTGGGCGACCGCCTGCGGGTGCAGCCGAAGAGCGACATGGCCGGCCAGGCCTGGACCGTGCGTG
AGCTGTTCTGCAACCGCAGGAAGGTCATGGAGGCAAAGGCCGGAAGCCTGGTGGAGTTGGAAACCCCCTTTAGGTTCGCG
GCTGGGGACGCGGTGTACAAGGTTTCCTCCAGGGAGGCCTTTACCATGAGCGAGAACGCCTGCATGCGGCGGCTGGAATC
GGTCAAGGGGGAAAAGCTCCCCTGCCGCTTACAGCTTTCGGCATCATGCTCCTCTCCCGTCGAGGAGGGAGGAGAGGTCA
TCCTGCATGTTTCGGCCGATGCCGCAGCTGTCCGTCTCGACCTGGACTTCCCCCTGGGGCGGCTGGAGCCGGCTCGCACC
GCTGAGATGGCGGCTGTCCTCAAGGCGCAGTTCGCCAAGACCGGGGAAGCCCCCTTCCGCCTGGAATCCCTGGAAGCGCC
CGATTTCCCCTCCCTGCTGATCCCCTCGGCTGCCTTCCGGGAGATCCGCGGCCGGCTGTACGCTGCACTGGCCGAGAAGG
TTTCACAGCAAGGTTTCCGGGAAGACATCGCCGCTGCCCGCGGCGCTGCGCTTCGGGAGCTGAAGATGGCGCTGGAAGAG
GCGGGCCGCACGGGCGGTGGCCGGGAGTCCCTGTCCGTGATCATGGACAATCCCCGCGACTGGCGCTTTCCGCTGCAGCT
GGGGGCGGAGCGCACCCTGCTGCAGCTCTCCAAGGCCACTATCCACCAGCTCCCCTCGCTGGTGCCCCGCATGCGCGGCT
CGGAGGAACGCATCGTCTGGCAGCTCCCCTTCATGATCTTCGACCGCGACCTGGCGCTCTACCGCTCCACTCTGGTACAG
CTGTACGGCGCCGGTTTCCGCCGGTTCGAGGCGGCGAACATCTCCCATTTCCACCTGCTGAAGAAGCTGGCCGGCCTGCA
CATCTCCGCCTGGCACCGCTGCTTCACCCTCAACAGCCAGTCCCTGCTGGCCTGGAAAGAACTGGGGGCCGAGAGCGTGA
CCCTCTACATGGAGGATGACGCGGCCAACTTGGGCGATCTGCTGGCTGCGCCGCTTGGCGTTGAACGGCGCGTGATCGTG
TATGCGCCCCTGCCGGTCATGACCACCAAGATCCGTATCAAGGATGTGCACAGCAACATCCCTCTGCAATCGGACCGCGG
CGAGGAGTATTCGGTCAGCAGTCGTGACGGTTTGCAGACCATCAGCGCGGCACTTCCGTTCTCCCTGACCGGCCGGCGCA
ATGAGCTGCGCCACAAGGGATGCAGTTCGTTCCTGATTGATCTGCGCCAGGCGAAACGTGAATCCTGGGCCGATATCATC
GGCGCCTTCAAGGCCGGCCGCCCCATGGCGGATACGACCGAGTTCAACTATGCCAACGAGTTGGTGTAG

Upstream 100 bases:

>100_bases
TAGCGCAACATCCTCCGTGGATGAGTGTGCCGACTCGATCATGCGCTACCTGGAAGAGCGTTTCGCCTGAGCATGAGCGT
GGTGAAGAGCCGGAAAAACA

Downstream 100 bases:

>100_bases
GGAAGACGTGAATGCCCGCCAGTGATATGGTTTGAATAGGGCCGAACCCATGAAAAGACACGATACGTCGGTGACAAAAA
TTATTGTTTTAACGCTGGTA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 822; Mature: 822

Protein sequence:

>822_residues
MHVSRIMSRKGHGYFTKDMVPMNSTDHKPELLAPAGSLESFFAAMEKGADAVYAGLRDFSARARAKNFSLSQMERMLAYA
HAHGRRIYVTLNTLVKEQELPQLVDTLAALAGMRVDGLIVQDLAVARLVRRHFPTIPLHASTQMTVHNTPGARVLQELGF
QRAVLARELAIDEVAAIAAATPLEIEVFVHGALCFSISGQCFFSSYLGGHSGNRGRCAQPCRRLYSHRGKQGYFFSTNDL
SAIDMLPELVRAGVRSLKIEGRMKSAEYVASVVQAYRLVLDATERSRGEALAAAKGLLKHSFGRTPTKGFLASQQPDDIA
NPWQKGGTGRFVGQIKSIRGNRLSFETRDSLHVGDRLRVQPKSDMAGQAWTVRELFCNRRKVMEAKAGSLVELETPFRFA
AGDAVYKVSSREAFTMSENACMRRLESVKGEKLPCRLQLSASCSSPVEEGGEVILHVSADAAAVRLDLDFPLGRLEPART
AEMAAVLKAQFAKTGEAPFRLESLEAPDFPSLLIPSAAFREIRGRLYAALAEKVSQQGFREDIAAARGAALRELKMALEE
AGRTGGGRESLSVIMDNPRDWRFPLQLGAERTLLQLSKATIHQLPSLVPRMRGSEERIVWQLPFMIFDRDLALYRSTLVQ
LYGAGFRRFEAANISHFHLLKKLAGLHISAWHRCFTLNSQSLLAWKELGAESVTLYMEDDAANLGDLLAAPLGVERRVIV
YAPLPVMTTKIRIKDVHSNIPLQSDRGEEYSVSSRDGLQTISAALPFSLTGRRNELRHKGCSSFLIDLRQAKRESWADII
GAFKAGRPMADTTEFNYANELV

Sequences:

>Translated_822_residues
MHVSRIMSRKGHGYFTKDMVPMNSTDHKPELLAPAGSLESFFAAMEKGADAVYAGLRDFSARARAKNFSLSQMERMLAYA
HAHGRRIYVTLNTLVKEQELPQLVDTLAALAGMRVDGLIVQDLAVARLVRRHFPTIPLHASTQMTVHNTPGARVLQELGF
QRAVLARELAIDEVAAIAAATPLEIEVFVHGALCFSISGQCFFSSYLGGHSGNRGRCAQPCRRLYSHRGKQGYFFSTNDL
SAIDMLPELVRAGVRSLKIEGRMKSAEYVASVVQAYRLVLDATERSRGEALAAAKGLLKHSFGRTPTKGFLASQQPDDIA
NPWQKGGTGRFVGQIKSIRGNRLSFETRDSLHVGDRLRVQPKSDMAGQAWTVRELFCNRRKVMEAKAGSLVELETPFRFA
AGDAVYKVSSREAFTMSENACMRRLESVKGEKLPCRLQLSASCSSPVEEGGEVILHVSADAAAVRLDLDFPLGRLEPART
AEMAAVLKAQFAKTGEAPFRLESLEAPDFPSLLIPSAAFREIRGRLYAALAEKVSQQGFREDIAAARGAALRELKMALEE
AGRTGGGRESLSVIMDNPRDWRFPLQLGAERTLLQLSKATIHQLPSLVPRMRGSEERIVWQLPFMIFDRDLALYRSTLVQ
LYGAGFRRFEAANISHFHLLKKLAGLHISAWHRCFTLNSQSLLAWKELGAESVTLYMEDDAANLGDLLAAPLGVERRVIV
YAPLPVMTTKIRIKDVHSNIPLQSDRGEEYSVSSRDGLQTISAALPFSLTGRRNELRHKGCSSFLIDLRQAKRESWADII
GAFKAGRPMADTTEFNYANELV
>Mature_822_residues
MHVSRIMSRKGHGYFTKDMVPMNSTDHKPELLAPAGSLESFFAAMEKGADAVYAGLRDFSARARAKNFSLSQMERMLAYA
HAHGRRIYVTLNTLVKEQELPQLVDTLAALAGMRVDGLIVQDLAVARLVRRHFPTIPLHASTQMTVHNTPGARVLQELGF
QRAVLARELAIDEVAAIAAATPLEIEVFVHGALCFSISGQCFFSSYLGGHSGNRGRCAQPCRRLYSHRGKQGYFFSTNDL
SAIDMLPELVRAGVRSLKIEGRMKSAEYVASVVQAYRLVLDATERSRGEALAAAKGLLKHSFGRTPTKGFLASQQPDDIA
NPWQKGGTGRFVGQIKSIRGNRLSFETRDSLHVGDRLRVQPKSDMAGQAWTVRELFCNRRKVMEAKAGSLVELETPFRFA
AGDAVYKVSSREAFTMSENACMRRLESVKGEKLPCRLQLSASCSSPVEEGGEVILHVSADAAAVRLDLDFPLGRLEPART
AEMAAVLKAQFAKTGEAPFRLESLEAPDFPSLLIPSAAFREIRGRLYAALAEKVSQQGFREDIAAARGAALRELKMALEE
AGRTGGGRESLSVIMDNPRDWRFPLQLGAERTLLQLSKATIHQLPSLVPRMRGSEERIVWQLPFMIFDRDLALYRSTLVQ
LYGAGFRRFEAANISHFHLLKKLAGLHISAWHRCFTLNSQSLLAWKELGAESVTLYMEDDAANLGDLLAAPLGVERRVIV
YAPLPVMTTKIRIKDVHSNIPLQSDRGEEYSVSSRDGLQTISAALPFSLTGRRNELRHKGCSSFLIDLRQAKRESWADII
GAFKAGRPMADTTEFNYANELV

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=378, Percent_Identity=37.037037037037, Blast_Score=212, Evalue=1e-55,
Organism=Escherichia coli, GI1788397, Length=394, Percent_Identity=31.4720812182741, Blast_Score=172, Evalue=8e-44,
Organism=Escherichia coli, GI1789548, Length=292, Percent_Identity=30.8219178082192, Blast_Score=138, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 90903; Mature: 90903

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVSRIMSRKGHGYFTKDMVPMNSTDHKPELLAPAGSLESFFAAMEKGADAVYAGLRDFS
CCHHHHHHCCCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHHH
ARARAKNFSLSQMERMLAYAHAHGRRIYVTLNTLVKEQELPQLVDTLAALAGMRVDGLIV
HHHHHCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
QDLAVARLVRRHFPTIPLHASTQMTVHNTPGARVLQELGFQRAVLARELAIDEVAAIAAA
HHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
TPLEIEVFVHGALCFSISGQCFFSSYLGGHSGNRGRCAQPCRRLYSHRGKQGYFFSTNDL
CCEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
SAIDMLPELVRAGVRSLKIEGRMKSAEYVASVVQAYRLVLDATERSRGEALAAAKGLLKH
HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SFGRTPTKGFLASQQPDDIANPWQKGGTGRFVGQIKSIRGNRLSFETRDSLHVGDRLRVQ
HCCCCCCCCCCCCCCCCHHCCHHHCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCEEEEC
PKSDMAGQAWTVRELFCNRRKVMEAKAGSLVELETPFRFAAGDAVYKVSSREAFTMSENA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCEEEEECCCCEEEECHHH
CMRRLESVKGEKLPCRLQLSASCSSPVEEGGEVILHVSADAAAVRLDLDFPLGRLEPART
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHH
AEMAAVLKAQFAKTGEAPFRLESLEAPDFPSLLIPSAAFREIRGRLYAALAEKVSQQGFR
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
EDIAAARGAALRELKMALEEAGRTGGGRESLSVIMDNPRDWRFPLQLGAERTLLQLSKAT
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCCCCCHHHHCCCHHHHHHHHHH
IHQLPSLVPRMRGSEERIVWQLPFMIFDRDLALYRSTLVQLYGAGFRRFEAANISHFHLL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCHHHHHH
KKLAGLHISAWHRCFTLNSQSLLAWKELGAESVTLYMEDDAANLGDLLAAPLGVERRVIV
HHHHCCCHHHHHHEEECCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEE
YAPLPVMTTKIRIKDVHSNIPLQSDRGEEYSVSSRDGLQTISAALPFSLTGRRNELRHKG
EECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCHHHHHHHH
CSSFLIDLRQAKRESWADIIGAFKAGRPMADTTEFNYANELV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MHVSRIMSRKGHGYFTKDMVPMNSTDHKPELLAPAGSLESFFAAMEKGADAVYAGLRDFS
CCHHHHHHCCCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHHH
ARARAKNFSLSQMERMLAYAHAHGRRIYVTLNTLVKEQELPQLVDTLAALAGMRVDGLIV
HHHHHCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
QDLAVARLVRRHFPTIPLHASTQMTVHNTPGARVLQELGFQRAVLARELAIDEVAAIAAA
HHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
TPLEIEVFVHGALCFSISGQCFFSSYLGGHSGNRGRCAQPCRRLYSHRGKQGYFFSTNDL
CCEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
SAIDMLPELVRAGVRSLKIEGRMKSAEYVASVVQAYRLVLDATERSRGEALAAAKGLLKH
HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SFGRTPTKGFLASQQPDDIANPWQKGGTGRFVGQIKSIRGNRLSFETRDSLHVGDRLRVQ
HCCCCCCCCCCCCCCCCHHCCHHHCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCEEEEC
PKSDMAGQAWTVRELFCNRRKVMEAKAGSLVELETPFRFAAGDAVYKVSSREAFTMSENA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCEEEEECCCCEEEECHHH
CMRRLESVKGEKLPCRLQLSASCSSPVEEGGEVILHVSADAAAVRLDLDFPLGRLEPART
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHH
AEMAAVLKAQFAKTGEAPFRLESLEAPDFPSLLIPSAAFREIRGRLYAALAEKVSQQGFR
HHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
EDIAAARGAALRELKMALEEAGRTGGGRESLSVIMDNPRDWRFPLQLGAERTLLQLSKAT
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEECCCCCCCCHHHHCCCHHHHHHHHHH
IHQLPSLVPRMRGSEERIVWQLPFMIFDRDLALYRSTLVQLYGAGFRRFEAANISHFHLL
HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCHHHHHH
KKLAGLHISAWHRCFTLNSQSLLAWKELGAESVTLYMEDDAANLGDLLAAPLGVERRVIV
HHHHCCCHHHHHHEEECCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEE
YAPLPVMTTKIRIKDVHSNIPLQSDRGEEYSVSSRDGLQTISAALPFSLTGRRNELRHKG
EECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCHHHHHHHH
CSSFLIDLRQAKRESWADIIGAFKAGRPMADTTEFNYANELV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]