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The map label for this gene is yfmP [H]

Identifier: 118480403

GI number: 118480403

Start: 5139154

End: 5139582

Strand: Reverse

Name: yfmP [H]

Synonym: BALH_4869

Alternate gene names: 118480403

Gene position: 5139582-5139154 (Counterclockwise)

Preceding gene: 118480406

Following gene: 118480402

Centisome position: 97.76

GC content: 37.3

Gene sequence:

>429_bases
TTGAAGAAGGGAGGAATAAACATGTATAAGATTGATGAAGTTACAAAGCAAGTTGGTTTAACAAAACGTACACTTCGTTA
TTATGAGGAAATTGGTTTAATTCATCCCCCAGAACGTAGTGAGGGGAACATTCGCCTATATACAGATGAAGATATCGCAA
GAATTAAAAGGATTGTAGAAGCGAAAGAAGTACTAGGAATTACGCTACAAGAAATGCAGCATTTCTTATCGTTAAAAGAA
AGAATGGAACAGAGAAGAAATAGCGAGAATCCTCGTGATCGTGAAGTGATTCAAGAAATTAAAGAGATGCTTGAAAAACA
AGTGCAAACGCTAGACGAGAAAATGGAGCAAATGCAGCGTGTGAAGGCCGAACTTGAGGATAGCTTACATCGTGCAGTGA
CATTTTTAGAGAATACAAAAGGAGAGTAA

Upstream 100 bases:

>100_bases
CATTATGAAACTGCTTTTGAAAAAATACAATTTAATATGACAAACATTTACAAAAGTCTAACAGTTGCACAAAAGTTAAC
GTTAACGTAAAATGTAATAA

Downstream 100 bases:

>100_bases
TCAAAATGGAGAGCAAACAAAAACTAGGGAGATTGATTACAGTGTTGGCTACTTTCCTTGCCTTTTCAGGTATAGGAGTA
GTGGACCCAATTTTGCCGAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKKGGINMYKIDEVTKQVGLTKRTLRYYEEIGLIHPPERSEGNIRLYTDEDIARIKRIVEAKEVLGITLQEMQHFLSLKE
RMEQRRNSENPRDREVIQEIKEMLEKQVQTLDEKMEQMQRVKAELEDSLHRAVTFLENTKGE

Sequences:

>Translated_142_residues
MKKGGINMYKIDEVTKQVGLTKRTLRYYEEIGLIHPPERSEGNIRLYTDEDIARIKRIVEAKEVLGITLQEMQHFLSLKE
RMEQRRNSENPRDREVIQEIKEMLEKQVQTLDEKMEQMQRVKAELEDSLHRAVTFLENTKGE
>Mature_142_residues
MKKGGINMYKIDEVTKQVGLTKRTLRYYEEIGLIHPPERSEGNIRLYTDEDIARIKRIVEAKEVLGITLQEMQHFLSLKE
RMEQRRNSENPRDREVIQEIKEMLEKQVQTLDEKMEQMQRVKAELEDSLHRAVTFLENTKGE

Specific function: Repressor of the yfmOP operon. A mutation in yfmP leads to overexpression of yfmO, probably causing a decrease in cellular copper that is eventually responsible for a reduced copper induction of copZA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=126, Percent_Identity=30.1587301587302, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 16888; Mature: 16888

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGGINMYKIDEVTKQVGLTKRTLRYYEEIGLIHPPERSEGNIRLYTDEDIARIKRIVE
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHH
AKEVLGITLQEMQHFLSLKERMEQRRNSENPRDREVIQEIKEMLEKQVQTLDEKMEQMQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKAELEDSLHRAVTFLENTKGE
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKGGINMYKIDEVTKQVGLTKRTLRYYEEIGLIHPPERSEGNIRLYTDEDIARIKRIVE
CCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHH
AKEVLGITLQEMQHFLSLKERMEQRRNSENPRDREVIQEIKEMLEKQVQTLDEKMEQMQR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKAELEDSLHRAVTFLENTKGE
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]