| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is rpoN [H]
Identifier: 118480179
GI number: 118480179
Start: 4878994
End: 4880370
Strand: Reverse
Name: rpoN [H]
Synonym: BALH_4634
Alternate gene names: 118480179
Gene position: 4880370-4878994 (Counterclockwise)
Preceding gene: 118480188
Following gene: 118480178
Centisome position: 92.83
GC content: 38.2
Gene sequence:
>1377_bases ATGGGTGTCTGTGATAGGATTCTCCTTTTACCAAACTTATTGTACAATAGAAACAAGGGGGAGATTAGTTTGAAGGCAAG TCTTTTACAAGAACAAAGCTTACGTTTGGCAATGACACAAGAGTTAAGGCAAGCGATTACAATGCTCCAGTATAATGTAC AAGAATTATCGGAGTTTTTGTATGAGCAATCGTTAGAGAATCCCCTTATTGAGTTAGGTGGTTTTGAGAGGGAGAAGAAA AAGAGCTCTAACAACAGTAAAAGTACCAGCAAACAAGTCGAGAATCAGATGGAAATCTACAGTGTGGATTCAACAACGAT TCAGCAACATTTATTAAATCAAATACAGTATTATAAAATAGAGGAAGAAGAGCGAAAAGTAGCTTCTTTCATTATTATGA ACATGGATGGAAATGGGTATTTACAAGAAACGAATGAAGAGTTAGCAAATCTTCTTTCCGCACCACTGCATGTAGTCGAC CGCTCTGTAGAGCTTGTCCAATCACTCGAGCCAGCAGGGGTAGGGGCGCGTAATATTCAGGAATGTCTAACCTTGCAATT GAAGCGCTTACAAAGGCGGAATGGATTGGCAGAAGAGGTTGTAGAAGATCATTTCGCTTATTTCGTGAAGAAAGATTGGA GAAAGCTTGTTCAAGTGTTGAAGTGTAGTAATGAAGAATTACAGGATGCAGTAAATTGTATAACGTCATTACAACCAAAA CCAGGTCTTGCGTTTTCTTCTGATAAACCACTTTATATTGTGCCTGATATGGCGGTGAAAAAAGATGGTGATCGTCTCGT TTTGCAAATGAACGAGAGAAATATGCCAAGAATTGAAATTCATTCTGAATATAGTGCGCTTCTTAATAATAGTGAAAGTG AAGTAGCATCTTACGTATCAGAAAAGTATCAGCATGTGCAGTGGATTATGCGTAGTTTAAAACAGAGAAAACAAACCCTT CTGCAAGTGATGACCATTATTATGGAAAAACAACGTGATTTCTTCTGGAAAGGTCCGGAGTATTTAAAGCCACTTGCTTT AAAAGAAGTAGCAGAAGAGCTAAGTGTGCATGAATCTACAATTAGTCGTGCAACGCGAAATAAATATGTGCAAACACCAC ACGGTTTATTTGAGATGAAATCGTTCTTTAGTAATGCCGTTTCGACGACTGAAGATGAAGCGGTTTCTACAAAGCGTGTA AAACAATTTATTCAAACGCTTGTTGAGGCGGAGAATAAGAAAAAGCCACTTTCAGACCAAAAGATTTCAAAATTGTTAGA AGAAGAACATGAAATTGTTATTTCTCGAAGAACAGTGGCGAAGTATAGAGAGCAAATGCACATCCCGGCGTCGTCATTAC GAAAAACGATCGGATAG
Upstream 100 bases:
>100_bases TGATAATAAATTTGGTCTTAATATTTTCTTTCAATATTATTCAAATTTCGGTTGTAAGTTGTAAATCTCATTAATACATA TAAATTAATAATATTTTGGA
Downstream 100 bases:
>100_bases GTGAAGAAGATGAAAGTTGTACTGTATACAAAAAAAGATTGTGGCCTTTGCGTGAAGGCGAAACAAGTTTTACAGGAAGT GCAATGTGAATATTCTTTTC
Product: RNA polymerase factor sigma-54
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MGVCDRILLLPNLLYNRNKGEISLKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFLYEQSLENPLIELGGFEREKK KSSNNSKSTSKQVENQMEIYSVDSTTIQQHLLNQIQYYKIEEEERKVASFIIMNMDGNGYLQETNEELANLLSAPLHVVD RSVELVQSLEPAGVGARNIQECLTLQLKRLQRRNGLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPK PGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSESEVASYVSEKYQHVQWIMRSLKQRKQTL LQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHESTISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRV KQFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRKTIG
Sequences:
>Translated_458_residues MGVCDRILLLPNLLYNRNKGEISLKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFLYEQSLENPLIELGGFEREKK KSSNNSKSTSKQVENQMEIYSVDSTTIQQHLLNQIQYYKIEEEERKVASFIIMNMDGNGYLQETNEELANLLSAPLHVVD RSVELVQSLEPAGVGARNIQECLTLQLKRLQRRNGLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPK PGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSESEVASYVSEKYQHVQWIMRSLKQRKQTL LQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHESTISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRV KQFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRKTIG >Mature_457_residues GVCDRILLLPNLLYNRNKGEISLKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFLYEQSLENPLIELGGFEREKKK SSNNSKSTSKQVENQMEIYSVDSTTIQQHLLNQIQYYKIEEEERKVASFIIMNMDGNGYLQETNEELANLLSAPLHVVDR SVELVQSLEPAGVGARNIQECLTLQLKRLQRRNGLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPKP GLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSESEVASYVSEKYQHVQWIMRSLKQRKQTLL QVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHESTISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRVK QFIQTLVEAENKKKPLSDQKISKLLEEEHEIVISRRTVAKYREQMHIPASSLRKTIG
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the levanase operon. The open complex (sigma-54 and core RNA poly
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=467, Percent_Identity=32.5481798715203, Blast_Score=267, Evalue=9e-73,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 52920; Mature: 52789
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVCDRILLLPNLLYNRNKGEISLKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFL CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEQSLENPLIELGGFEREKKKSSNNSKSTSKQVENQMEIYSVDSTTIQQHLLNQIQYYKI HHHHHCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC EEEERKVASFIIMNMDGNGYLQETNEELANLLSAPLHVVDRSVELVQSLEPAGVGARNIQ CHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ECLTLQLKRLQRRNGLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPK HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC PGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSESEVASYVS CCCCCCCCCCEEEECCHHHCCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCHHHHHHHHH EKYQHVQWIMRSLKQRKQTLLQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHEST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRVKQFIQTLVEAENKKKPLSDQ HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH KISKLLEEEHEIVISRRTVAKYREQMHIPASSLRKTIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC >Mature Secondary Structure GVCDRILLLPNLLYNRNKGEISLKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFL CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEQSLENPLIELGGFEREKKKSSNNSKSTSKQVENQMEIYSVDSTTIQQHLLNQIQYYKI HHHHHCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC EEEERKVASFIIMNMDGNGYLQETNEELANLLSAPLHVVDRSVELVQSLEPAGVGARNIQ CHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH ECLTLQLKRLQRRNGLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPK HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC PGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSESEVASYVS CCCCCCCCCCEEEECCHHHCCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCHHHHHHHHH EKYQHVQWIMRSLKQRKQTLLQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHEST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRVKQFIQTLVEAENKKKPLSDQ HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH KISKLLEEEHEIVISRRTVAKYREQMHIPASSLRKTIG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1924373; 8969506; 9384377 [H]