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The map label for this gene is ydcN [H]

Identifier: 118479525

GI number: 118479525

Start: 4158471

End: 4159184

Strand: Direct

Name: ydcN [H]

Synonym: BALH_3947

Alternate gene names: 118479525

Gene position: 4158471-4159184 (Clockwise)

Preceding gene: 118479522

Following gene: 118479538

Centisome position: 79.1

GC content: 33.61

Gene sequence:

>714_bases
ATGTTGATTCATTTCCTTCTCTCCTTTATAGTTTTCTTATACAAAACTTTTATTTACATTACAAAACATACACTAATTTT
TTTTATTCGTCAATTCATTTTCACTGGGAAAATATATATTTTTTTTGCTATGATACAAATAGTTGTTTACAAAAAGGAGC
TTGATTTTATGAATATTGGTTCTGCAATACGTGAAATTCGTCAACGTAGAGGCATAACAATTGCACAAATTTGTGAGGGA
ACAGGTCTTTCTAAAGGGTTTATGAGTCAGGTTGAAAATAATAAAACATCACCATCTATCTCAACTTTAGAAACGATCTC
CAATTTTTTAAACGTTCCTCTTCCCTATTTATTGTTAGAACAAAAAGATCGATTGAAAGTTGTCAAAAAGGTAGAGCGTA
AATATAGTGTATACGGAAAAGATGAACAAAGAATTGAACATGTTGCAGAGCAAGGTGGTCTTCGACTCAATCTCGTAGAA
ATTCCTGCTGGGTTTCCGAAAGAAAACACACCAAATGCCCATGAAGGAGAAGAATGTCACCTTGTATTACGCGGAAAACT
AGAAGTTCAACACGGAGAAGATGTTGCAATTGTAGAAGAAGGGGATTCTTTCTCCTGGAATGCATGTGTTCCTCATATCG
TTCGTAATATAGGAGAAGAAACTGCATTATTACTCATCTCTAGTCATGCTGAAAATCGAAAACGTGTTTATTAA

Upstream 100 bases:

>100_bases
TGAACCACCCTGCAATATTGTCAATTCCCGATTGGAATTTTGTTAAACCGTGCATAAAGAACGTTACCCCTAACACGATA
CGAATAATTAAGTTACCAAT

Downstream 100 bases:

>100_bases
ACAAAAAAGAAGCCTGTAAATCAGGCTTCTTTTTATCCTCTTATAACTCCATAGCTTGTCCCAACTAGTACAGTTTTTTC
GTTTTGATTACGATAAACTG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLIHFLLSFIVFLYKTFIYITKHTLIFFIRQFIFTGKIYIFFAMIQIVVYKKELDFMNIGSAIREIRQRRGITIAQICEG
TGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVE
IPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRVY

Sequences:

>Translated_237_residues
MLIHFLLSFIVFLYKTFIYITKHTLIFFIRQFIFTGKIYIFFAMIQIVVYKKELDFMNIGSAIREIRQRRGITIAQICEG
TGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVE
IPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRVY
>Mature_237_residues
MLIHFLLSFIVFLYKTFIYITKHTLIFFIRQFIFTGKIYIFFAMIQIVVYKKELDFMNIGSAIREIRQRRGITIAQICEG
TGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLEQKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVE
IPAGFPKENTPNAHEGEECHLVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRVY

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=168, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27261; Mature: 27261

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHFLLSFIVFLYKTFIYITKHTLIFFIRQFIFTGKIYIFFAMIQIVVYKKELDFMNIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLE
HHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHC
QKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEGEECH
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEE
LVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRVY
EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLIHFLLSFIVFLYKTFIYITKHTLIFFIRQFIFTGKIYIFFAMIQIVVYKKELDFMNIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLLLE
HHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHC
QKDRLKVVKKVERKYSVYGKDEQRIEHVAEQGGLRLNLVEIPAGFPKENTPNAHEGEECH
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEE
LVLRGKLEVQHGEDVAIVEEGDSFSWNACVPHIVRNIGEETALLLISSHAENRKRVY
EEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]