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The map label for this gene is ycdB [H]

Identifier: 118479506

GI number: 118479506

Start: 4138704

End: 4140035

Strand: Reverse

Name: ycdB [H]

Synonym: BALH_3928

Alternate gene names: 118479506

Gene position: 4140035-4138704 (Counterclockwise)

Preceding gene: 118479507

Following gene: 118479504

Centisome position: 78.75

GC content: 34.23

Gene sequence:

>1332_bases
TTGAATAGACATACTGGTAGTTTAATTGACTTTAGGATAGAGGATGAAAAAGCTTTTTCGAGCGGTGAGGAAGCGATAGA
GGACAATCAAGCAAGAGAGATTGCAAATACATTATTAAAAAAATATACAAAAGAAGGATCTGAATTTTATACATATGTAA
TTGTTAAGGGTGACAGGCGCGGTTGCAAAGAAGTAAATTATATGCAAGAAGTGAATGGCTATCCATTGCCAAATACAGGG
TGTGTTGTGCGAGTTCATCCTTCAGGAAATGTTGTGAATTTCCATTACAATGGACAAAAAGCGATAGAGAAAAAACCATT
ATGGCCAAGTGACATTGTTGAGGAGAACGTCGTTTTAGAAAGTTTGAAAGCTAGACAAGATATGAGACTTGTATTTGTAG
ATTTAACATACTCTTCATGTGAGTATGAAAACGGGGAGGAAGTAAAAGGGTACCATCTTGTATATGAACCAGAGCCTAGT
CATGCATGTATTGATGCAAGTACAGGTAAAGATTTATATGGGCCAGAACATTATAAATTACCGCCAACAGTAGTTGTTGA
AAAAATAGAAAAAGGTAGCCGGCAAGATGACATATTCGAATTATTTGACTGGGATAAAGAAAGTTTTGCAAAAGTAGATG
AGACGGAAAATAATAATGAAATAAGGATGAAATTTGTTCCGAAAGAGGAATTACAAAAACAGAAAGAAGAAAAGAATCCA
TATTTAATGAATGAATTCTTTAAAAAGCATTTACCGATGTTAAAATATAATAATTTGATTGGCATTACGGTTGACAAATT
AACCAATGAATTAATTGGCTTTATAAAACTGACAGAAGATAAAGAAGCAAAACAAATACTGTCTAGAGAGGAATGTTTAC
AAAAAGCAATTCAATTTTTAGAGTGTGTTATTCCCGATATCACACAATATCTTCGTCTTTGGGAGGAACGTGAAGAAGCA
GAAGATGGGATTGAAAGATTTAACTTCTCCGTATATGTGAATGGTATTCCGGCAGAGTATAAGCACTTTATGATCAATAT
CAACGCGGAAAATGGTGCAGTGATGCATTACTCTGGAGAGTCTAGCAAATTTATAAAAGAATTACTTACATACGAAACAA
CACCAAAAGTAACGAAAGAAGAAGCGTTAGAAATATACAGAGATGCTATCCGAGTTAAATTAGAATGGTCTATAGATCAT
GATGTAGAGGAAACGGTATATCAATTGCTGTATAAACAAACAACGGATGAGAATTATAACGAATTCTTCGACGGTAGTCG
AGAAATTCGTTATATTGATGCGCATACTGGGGAGAAAATTTGGAGCAAGTAA

Upstream 100 bases:

>100_bases
TTATAGGCTTGTTGTAGATGATCAAGAAGGTGTGGATGACCCATATCATCTATTATGATGGGAGCATAAAGCGGATGAGG
AGAGAACAATACGGATTACG

Downstream 100 bases:

>100_bases
AATAAAAAGAGTTATTTTTCAAAGAAAATAACTCTTTTTATTTTTATAATTTGCTTGTTCGTTTTTCAAATGTAAATGTG
ATAGGAAGGTTGGAAGGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MNRHTGSLIDFRIEDEKAFSSGEEAIEDNQAREIANTLLKKYTKEGSEFYTYVIVKGDRRGCKEVNYMQEVNGYPLPNTG
CVVRVHPSGNVVNFHYNGQKAIEKKPLWPSDIVEENVVLESLKARQDMRLVFVDLTYSSCEYENGEEVKGYHLVYEPEPS
HACIDASTGKDLYGPEHYKLPPTVVVEKIEKGSRQDDIFELFDWDKESFAKVDETENNNEIRMKFVPKEELQKQKEEKNP
YLMNEFFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEA
EDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRDAIRVKLEWSIDH
DVEETVYQLLYKQTTDENYNEFFDGSREIRYIDAHTGEKIWSK

Sequences:

>Translated_443_residues
MNRHTGSLIDFRIEDEKAFSSGEEAIEDNQAREIANTLLKKYTKEGSEFYTYVIVKGDRRGCKEVNYMQEVNGYPLPNTG
CVVRVHPSGNVVNFHYNGQKAIEKKPLWPSDIVEENVVLESLKARQDMRLVFVDLTYSSCEYENGEEVKGYHLVYEPEPS
HACIDASTGKDLYGPEHYKLPPTVVVEKIEKGSRQDDIFELFDWDKESFAKVDETENNNEIRMKFVPKEELQKQKEEKNP
YLMNEFFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEA
EDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRDAIRVKLEWSIDH
DVEETVYQLLYKQTTDENYNEFFDGSREIRYIDAHTGEKIWSK
>Mature_443_residues
MNRHTGSLIDFRIEDEKAFSSGEEAIEDNQAREIANTLLKKYTKEGSEFYTYVIVKGDRRGCKEVNYMQEVNGYPLPNTG
CVVRVHPSGNVVNFHYNGQKAIEKKPLWPSDIVEENVVLESLKARQDMRLVFVDLTYSSCEYENGEEVKGYHLVYEPEPS
HACIDASTGKDLYGPEHYKLPPTVVVEKIEKGSRQDDIFELFDWDKESFAKVDETENNNEIRMKFVPKEELQKQKEEKNP
YLMNEFFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFLECVIPDITQYLRLWEEREEA
EDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGESSKFIKELLTYETTPKVTKEEALEIYRDAIRVKLEWSIDH
DVEETVYQLLYKQTTDENYNEFFDGSREIRYIDAHTGEKIWSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycdC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005075 [H]

Pfam domain/function: PF03413 PepSY [H]

EC number: NA

Molecular weight: Translated: 51821; Mature: 51821

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHTGSLIDFRIEDEKAFSSGEEAIEDNQAREIANTLLKKYTKEGSEFYTYVIVKGDRR
CCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
GCKEVNYMQEVNGYPLPNTGCVVRVHPSGNVVNFHYNGQKAIEKKPLWPSDIVEENVVLE
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHH
SLKARQDMRLVFVDLTYSSCEYENGEEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKL
HHHCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCC
PPTVVVEKIEKGSRQDDIFELFDWDKESFAKVDETENNNEIRMKFVPKEELQKQKEEKNP
CHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCC
YLMNEFFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFL
HHHHHHHHHCCCCEECCCEEEEEHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHH
ECVIPDITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCEEEEECCC
SSKFIKELLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTDENYN
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCHH
EFFDGSREIRYIDAHTGEKIWSK
HHCCCCCEEEEEECCCCCHHHCC
>Mature Secondary Structure
MNRHTGSLIDFRIEDEKAFSSGEEAIEDNQAREIANTLLKKYTKEGSEFYTYVIVKGDRR
CCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
GCKEVNYMQEVNGYPLPNTGCVVRVHPSGNVVNFHYNGQKAIEKKPLWPSDIVEENVVLE
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHH
SLKARQDMRLVFVDLTYSSCEYENGEEVKGYHLVYEPEPSHACIDASTGKDLYGPEHYKL
HHHCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCC
PPTVVVEKIEKGSRQDDIFELFDWDKESFAKVDETENNNEIRMKFVPKEELQKQKEEKNP
CHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHCCC
YLMNEFFKKHLPMLKYNNLIGITVDKLTNELIGFIKLTEDKEAKQILSREECLQKAIQFL
HHHHHHHHHCCCCEECCCEEEEEHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHH
ECVIPDITQYLRLWEEREEAEDGIERFNFSVYVNGIPAEYKHFMININAENGAVMHYSGE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCEEEEECCC
SSKFIKELLTYETTPKVTKEEALEIYRDAIRVKLEWSIDHDVEETVYQLLYKQTTDENYN
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCHH
EFFDGSREIRYIDAHTGEKIWSK
HHCCCCCEEEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]