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The map label for this gene is rbsR [H]

Identifier: 118479306

GI number: 118479306

Start: 3937009

End: 3937872

Strand: Reverse

Name: rbsR [H]

Synonym: BALH_3721

Alternate gene names: 118479306

Gene position: 3937872-3937009 (Counterclockwise)

Preceding gene: 118479308

Following gene: 118479303

Centisome position: 74.91

GC content: 32.75

Gene sequence:

>864_bases
GTGGCAACTATACGTGATGTTGCAAAATTGGCAGGTGTTTCAGTCGCAACCGTTTCACGAGTTATGAATGAAAAAGGATA
CGTTCATGAGGACACAGTAAAACAAGTAAAGGAAGCAATTGAGGAGTTACGTTATAGGCCAAATAGTGCAGCAAAGCCAT
TATTTAAAGAGAATTCAACAATAATTGCATTACTTGTAGATAATTTATATAATCCATCAAACATCACTTTGCTACATTGT
ATTGAGGAAATAGCATATAAAGAAGGATATCAAATCATTGTTTGTAATATAGAGAATAAAGATAGATGCATACATATGTT
GAAGGAAAATAACATTGCAGGTGTTATTTTGACAAGATCGGTTTTTAAAAGTATAGGAGAAATTCCACTTCCGTTTGTTG
TGATTGATGAAAAAAAATCGCATGTAAACTATTATGAAAGTGGACAAAGAGCGGTTTCTTTATTAAAAGAAAAAGGCTGT
CACTTCCTTGCTTATTTCGGTGAGGGAGAAGATAGTGAAGAAATGGAAAATCACATATCAGGATTTTTAGACGCTGTTTG
GGAGGGAGGAATCTCTTATCGAGAAGTATGTGTACAAGGATATACGAATAAACAGTTTATTACATTATTGCGAAACAATC
CGTATATAGATGGAATTGTAACTGAAAGTGATAAGGTTACTTTTGAGTTAATTCAAGCAGCAAAAAATTTAAATATCCGT
ATACCGGATAAATTAAAAATTATTGGACTGAACGGGAGTATAGACAGTGAGTGGATAGGGTCGTCATTTATGAAAATTGA
AAGTTGTATCGAAGAAAATGGGGAAATAGCGTTGCAACAATTAAAAGAAAAAATAAAAAAGTAA

Upstream 100 bases:

>100_bases
ATGTAACAATTTTCAGAAATATAAGTTATTAGCCTTGACGAATATTGTAATTTAGGTTACCGTAAAATTGTAATCTATTA
CCATATTAAGGGGTGACGAT

Downstream 100 bases:

>100_bases
AAGGTGCGTATAAAACGCACCTTTTATAATGTAATCGCGGCAATAAAGCCAAATATAAGTAAAGGTATATTGTAATGTAG
AAAAGTTGGTACACATGTAT

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAAKPLFKENSTIIALLVDNLYNPSNITLLHC
IEEIAYKEGYQIIVCNIENKDRCIHMLKENNIAGVILTRSVFKSIGEIPLPFVVIDEKKSHVNYYESGQRAVSLLKEKGC
HFLAYFGEGEDSEEMENHISGFLDAVWEGGISYREVCVQGYTNKQFITLLRNNPYIDGIVTESDKVTFELIQAAKNLNIR
IPDKLKIIGLNGSIDSEWIGSSFMKIESCIEENGEIALQQLKEKIKK

Sequences:

>Translated_287_residues
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAAKPLFKENSTIIALLVDNLYNPSNITLLHC
IEEIAYKEGYQIIVCNIENKDRCIHMLKENNIAGVILTRSVFKSIGEIPLPFVVIDEKKSHVNYYESGQRAVSLLKEKGC
HFLAYFGEGEDSEEMENHISGFLDAVWEGGISYREVCVQGYTNKQFITLLRNNPYIDGIVTESDKVTFELIQAAKNLNIR
IPDKLKIIGLNGSIDSEWIGSSFMKIESCIEENGEIALQQLKEKIKK
>Mature_286_residues
ATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAAKPLFKENSTIIALLVDNLYNPSNITLLHCI
EEIAYKEGYQIIVCNIENKDRCIHMLKENNIAGVILTRSVFKSIGEIPLPFVVIDEKKSHVNYYESGQRAVSLLKEKGCH
FLAYFGEGEDSEEMENHISGFLDAVWEGGISYREVCVQGYTNKQFITLLRNNPYIDGIVTESDKVTFELIQAAKNLNIRI
PDKLKIIGLNGSIDSEWIGSSFMKIESCIEENGEIALQQLKEKIKK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=311, Percent_Identity=25.08038585209, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787948, Length=317, Percent_Identity=23.9747634069401, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790715, Length=308, Percent_Identity=24.3506493506494, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789202, Length=288, Percent_Identity=23.9583333333333, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787580, Length=277, Percent_Identity=26.7148014440433, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789068, Length=280, Percent_Identity=26.0714285714286, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994940, Length=305, Percent_Identity=24.2622950819672, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788474, Length=284, Percent_Identity=26.056338028169, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787906, Length=261, Percent_Identity=24.904214559387, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786268, Length=183, Percent_Identity=27.8688524590164, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790369, Length=308, Percent_Identity=23.7012987012987, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32394; Mature: 32262

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAAKPLFKENST
CCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCE
IIALLVDNLYNPSNITLLHCIEEIAYKEGYQIIVCNIENKDRCIHMLKENNIAGVILTRS
EEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEEEHHH
VFKSIGEIPLPFVVIDEKKSHVNYYESGQRAVSLLKEKGCHFLAYFGEGEDSEEMENHIS
HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
GFLDAVWEGGISYREVCVQGYTNKQFITLLRNNPYIDGIVTESDKVTFELIQAAKNLNIR
HHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCEE
IPDKLKIIGLNGSIDSEWIGSSFMKIESCIEENGEIALQQLKEKIKK
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAAKPLFKENST
CCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCE
IIALLVDNLYNPSNITLLHCIEEIAYKEGYQIIVCNIENKDRCIHMLKENNIAGVILTRS
EEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEEEHHH
VFKSIGEIPLPFVVIDEKKSHVNYYESGQRAVSLLKEKGCHFLAYFGEGEDSEEMENHIS
HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
GFLDAVWEGGISYREVCVQGYTNKQFITLLRNNPYIDGIVTESDKVTFELIQAAKNLNIR
HHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCEE
IPDKLKIIGLNGSIDSEWIGSSFMKIESCIEENGEIALQQLKEKIKK
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]