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The map label for this gene is rbgA [H]

Identifier: 118479060

GI number: 118479060

Start: 3684080

End: 3685024

Strand: Reverse

Name: rbgA [H]

Synonym: BALH_3469

Alternate gene names: 118479060

Gene position: 3685024-3684080 (Counterclockwise)

Preceding gene: 118479061

Following gene: 118479059

Centisome position: 70.1

GC content: 36.83

Gene sequence:

>945_bases
TTGGCCATTAAAAGATGCTCGTATTGTGAAATAAAAGAAAAAGAAGGTGGCAACATGGTAATTCAATGGTTCCCGGGACA
TATGGCAAAGGCTAGACGCCAAGTAACAGAAAAATTAAAGTTAATTGATGTTGTAATTGAGCTTGTAGATGCTCGATTAC
CTTTATCTTCTCGAAATCCGATGATCGATGAGATTATTACACATAAACCGAGGCTTGTTGTTTTAAATAAAGCCGATATG
GCAGATGATCGTTTAACAAAACAATGGATCGCATATTTTAAAGAAAAAGGCCATATGGCAATTTCAATTAACGCACAAGC
TGGACAAGGTATGAAGGAAATTGCAGCGGCTTGTAAAGTGTTAGTGAAAGAGAAATTTGATAAAATGGTTGCGAAAGGTA
TTAGACCGAGAGCGATTCGTGCATTAATTGTAGGTATACCGAATGTTGGTAAATCTACGTTGATTAATAAGTTAGCGAAG
AAAAATATTGCTAAAACAGGAGATCGTCCTGGTGTGACAACAGCTCAGCAATGGATTAAAGTTGGGAAGGAAATGGAATT
ACTTGATACACCAGGTATACTATGGCCTAAATTTGAAGACGAATTAGTTGGATTGCGTCTAGCTACGACTGGTGCAATTA
AAGATTCTATTTTAAATCTACAAGATGTAGCTGTTTATGCACTACGTTTTATGGAGAAACATTACCCAGAGCGATTAAAA
GAGCGTTATAATTTGAATGACATTCCAGAAGATATCGTAGAGTTATTTGATGCGATTGGAAAAAATAGAGGCTGTTTAAT
GGGCGGCGGAATGATTGATTATGATAAAACATCTGAACTTGTACTTCGTGAGCTTCGTGGTGGCAAACTTGGAAAAATGA
CGTTTGAAACACCAGAAGAGTTTGCAGAGCAGACAGAAGATGCAGAAAAAGTAGAAGAAGTATAA

Upstream 100 bases:

>100_bases
AATTATTTGTTTTAGGCGATAATCGTCGTTTTAGTAAAGATAGCCGTTCAATTGGTACAATTTCAATGGACCAAGTGATT
GGAAAAGCAAATATACTATA

Downstream 100 bases:

>100_bases
GACGTGCGTTTGTACGTCTTTTCTTTTTTGTATATAAAGGGAGTGGCATGAATGCAAAAAGTGACGATTCAAGAAGCGGA
ACATTTACTGCAAGAAATTA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM
ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAK
KNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK
ERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV

Sequences:

>Translated_314_residues
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM
ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAK
KNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK
ERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV
>Mature_313_residues
AIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMA
DDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKK
NIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKE
RYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=315, Percent_Identity=30.7936507936508, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI45643129, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643127, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45593130, Length=279, Percent_Identity=25.8064516129032, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7019419, Length=252, Percent_Identity=24.2063492063492, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI296317324, Length=329, Percent_Identity=24.3161094224924, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9506611, Length=329, Percent_Identity=24.3161094224924, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=235, Percent_Identity=30.6382978723404, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI32563985, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI71990926, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI32563983, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=289, Percent_Identity=26.9896193771626, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI25143545, Length=277, Percent_Identity=25.9927797833935, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=317, Percent_Identity=25.5520504731861, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=180, Percent_Identity=28.8888888888889, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323744, Length=242, Percent_Identity=32.2314049586777, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=276, Percent_Identity=25.3623188405797, Blast_Score=79, Evalue=7e-16,
Organism=Drosophila melanogaster, GI85815858, Length=310, Percent_Identity=30.3225806451613, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI19922460, Length=278, Percent_Identity=27.3381294964029, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28572990, Length=280, Percent_Identity=29.6428571428571, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35379; Mature: 35248

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNP
CCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
MIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKV
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
LVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIK
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK
HCCCHHHHCCCCCCCCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEE
HHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
FAEQTEDAEKVEEV
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNP
CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
MIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKV
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
LVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIK
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VGKEMELLDTPGILWPKFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK
HCCCHHHHCCCCCCCCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERYNLNDIPEDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETPEE
HHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
FAEQTEDAEKVEEV
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]