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The map label for this gene is hup [H]

Identifier: 118478949

GI number: 118478949

Start: 3558337

End: 3558618

Strand: Direct

Name: hup [H]

Synonym: BALH_3354

Alternate gene names: 118478949

Gene position: 3558337-3558618 (Clockwise)

Preceding gene: 118478948

Following gene: 118478960

Centisome position: 67.69

GC content: 37.59

Gene sequence:

>282_bases
GTGAAAAACATGAACAAAACAGAATTAATTAAAAACGTAGCACAAAATGCTGAGATTTCTCAAAAAGAAGCTACTGTAGT
TGTACAAACTGTAGTAGAATCAATCACTAACACTTTAGCTGCTGGTGAAAAAGTACAACTTATCGGATTCGGTACATTCG
AAGTTCGCGAAAGAGCTGCTCGTACAGGCCGTAACCCACAAACTGGTGAAGAAATGCAAATCGCGGCTTCTAAAGTACCT
GCTTTCAAAGCTGGTAAAGAACTAAAAGAAGCTGTAAAATAA

Upstream 100 bases:

>100_bases
ACAAATTCTATTTTTTTTTTGCGAATATATGTACGTACACTTGTTCTCGAATGTTTTATACGTTATAATAACAACTTAAA
TAGCAATATTTACATATGAG

Downstream 100 bases:

>100_bases
TGAAAAAATAGCCTTCTCGTAAACGAGAAGGCTATTTTTTCATTACATAATTAGTAAAAACCTGACCATTATGCTATTTC
TTTTGTTCCTTTATGCAAAT

Product: HU family DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTGRNPQTGEEMQIAASKVP
AFKAGKELKEAVK

Sequences:

>Translated_93_residues
MKNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTGRNPQTGEEMQIAASKVP
AFKAGKELKEAVK
>Mature_93_residues
MKNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTGRNPQTGEEMQIAASKVP
AFKAGKELKEAVK

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=56.1797752808989, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=55.5555555555556, Blast_Score=106, Evalue=2e-25,
Organism=Escherichia coli, GI1787141, Length=88, Percent_Identity=43.1818181818182, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=37.0786516853933, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10103; Mature: 10103

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
RTGRNPQTGEEMQIAASKVPAFKAGKELKEAVK
HCCCCCCCCHHHHHHHHHCCCHHCCHHHHHHCC
>Mature Secondary Structure
MKNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
RTGRNPQTGEEMQIAASKVPAFKAGKELKEAVK
HCCCCCCCCHHHHHHHHHCCCHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA