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The map label for this gene is alsR [H]

Identifier: 118478905

GI number: 118478905

Start: 3508179

End: 3509108

Strand: Reverse

Name: alsR [H]

Synonym: BALH_3308

Alternate gene names: 118478905

Gene position: 3509108-3508179 (Counterclockwise)

Preceding gene: 118478907

Following gene: 118478904

Centisome position: 66.75

GC content: 35.81

Gene sequence:

>930_bases
TTGAAATGGAAAAGGGTGTCCAAAATGGAATTACGGCATTTGCAATATTTTGTTGTAGTGGCAGAGGAGTTACACTTTGG
ACGAGCAGCTGCTCGTTTACAAATGACACAACCACCGCTTAGTCAACAAATTCAGCAATTAGAAAAAGAAATGGGAGTTA
TGTTATTTTCAAGAACGAAGAGAAAGGTTGAATTAACAGAAGCTGGAGAAATGTTTTTGAAAGAAGTAAAAAAAGCGTTT
GAACAAATTGAAAAAGCTGTAGAGATTGCACAAAGTGCCCAAAGGGGAGAAGTGGGCTCACTTTCAATTGGTTTTGTAGG
TGCGGCGATATATGATATTTTACCATCTATCGTAAGAGAGTATAGAAAGAAATTTCCGAGGGTATCTGTTGCGTTACATG
AATTATCTACTCCAGATCAAGTGCATGCACTTCATGATAATCGTATTGATATTGGATTTTTGCGTCCACCAATCCCAACA
CAACTATTAGAATTAGAGCCAATTCAAAAACTATCTTGTACTTTATGTTTACCGAAGGCTCATCCACTTGCAGAGAAAGA
TGAAATACATATAGAAGATTTACGGGATGAACCGTTTGTATTTATTACGAGACCAGTATGGCCAGCTTTGTATGATACAA
TTTTATCCCTTTGTAGAGAAGTTGGATTTAGCCCGCGTATTGTGCAAGAAGCAACGGAATATCAAACAGTTATGGGACTT
GTAGCAGCAGGGATTGGAATTACAGTAATACCGGTATCGGCAAATAAATTATATAAAACAGAAGTTGTATATAAAGAGCT
ATATGATTCTAATTTTGTTGCAGAAATGTCAGTCGCTTACAAAAAAATGAATAGCAATCCAGAGCTTTTAGAGTTTTTAA
AAATTGCAAGAGAGAAGAAAAGAATAGAAGTTGAGGATGAGATTAATTAA

Upstream 100 bases:

>100_bases
TAAAAATTGTAAAAAAGAGTTAACAATTTCTACTATACGTTCATTCGAAAAATTTGTCTAATATATAAATTATATGTTAT
TAATATATTAGACGTATTAA

Downstream 100 bases:

>100_bases
GTAATTAAAAAGTACACCTCATTAAACACTAAAGCGGAAATGTAATTATATTGCATTTCCGCTTTAGTGTTCTTTTTTTA
GTTCTATACGAAAGAGATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Als operon regulatory protein [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKWKRVSKMELRHLQYFVVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTKRKVELTEAGEMFLKEVKKAF
EQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVREYRKKFPRVSVALHELSTPDQVHALHDNRIDIGFLRPPIPT
QLLELEPIQKLSCTLCLPKAHPLAEKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGFSPRIVQEATEYQTVMGL
VAAGIGITVIPVSANKLYKTEVVYKELYDSNFVAEMSVAYKKMNSNPELLEFLKIAREKKRIEVEDEIN

Sequences:

>Translated_309_residues
MKWKRVSKMELRHLQYFVVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTKRKVELTEAGEMFLKEVKKAF
EQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVREYRKKFPRVSVALHELSTPDQVHALHDNRIDIGFLRPPIPT
QLLELEPIQKLSCTLCLPKAHPLAEKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGFSPRIVQEATEYQTVMGL
VAAGIGITVIPVSANKLYKTEVVYKELYDSNFVAEMSVAYKKMNSNPELLEFLKIAREKKRIEVEDEIN
>Mature_309_residues
MKWKRVSKMELRHLQYFVVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTKRKVELTEAGEMFLKEVKKAF
EQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVREYRKKFPRVSVALHELSTPDQVHALHDNRIDIGFLRPPIPT
QLLELEPIQKLSCTLCLPKAHPLAEKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGFSPRIVQEATEYQTVMGL
VAAGIGITVIPVSANKLYKTEVVYKELYDSNFVAEMSVAYKKMNSNPELLEFLKIAREKKRIEVEDEIN

Specific function: Regulates the expression of the alsSD operon for acetoin biosynthesis [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=276, Percent_Identity=38.768115942029, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI2367136, Length=292, Percent_Identity=33.5616438356164, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=35.6164383561644, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=31.8548387096774, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=29.3388429752066, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=25.1012145748988, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=29.0836653386454, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789204, Length=254, Percent_Identity=26.7716535433071, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788748, Length=264, Percent_Identity=26.5151515151515, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081904, Length=185, Percent_Identity=31.3513513513514, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788297, Length=256, Percent_Identity=26.953125, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=298, Percent_Identity=26.510067114094, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=23.3870967741935, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=26.3374485596708, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787589, Length=123, Percent_Identity=38.2113821138211, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789506, Length=242, Percent_Identity=25.2066115702479, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=197, Percent_Identity=27.4111675126904, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=25.2808988764045, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789639, Length=248, Percent_Identity=23.7903225806452, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787949, Length=302, Percent_Identity=23.841059602649, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=25.6809338521401, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=145, Percent_Identity=26.8965517241379, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786401, Length=155, Percent_Identity=24.5161290322581, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35365; Mature: 35365

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWKRVSKMELRHLQYFVVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
RKVELTEAGEMFLKEVKKAFEQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVRE
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHH
YRKKFPRVSVALHELSTPDQVHALHDNRIDIGFLRPPIPTQLLELEPIQKLSCTLCLPKA
HHHHCCHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHCCCCHHHHHHEEECCCC
HPLAEKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGFSPRIVQEATEYQTVMGL
CCCCCCCCEEHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VAAGIGITVIPVSANKLYKTEVVYKELYDSNFVAEMSVAYKKMNSNPELLEFLKIAREKK
HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RIEVEDEIN
CCCCCCCCC
>Mature Secondary Structure
MKWKRVSKMELRHLQYFVVVAEELHFGRAAARLQMTQPPLSQQIQQLEKEMGVMLFSRTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
RKVELTEAGEMFLKEVKKAFEQIEKAVEIAQSAQRGEVGSLSIGFVGAAIYDILPSIVRE
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHH
YRKKFPRVSVALHELSTPDQVHALHDNRIDIGFLRPPIPTQLLELEPIQKLSCTLCLPKA
HHHHCCHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHCCCCHHHHHHEEECCCC
HPLAEKDEIHIEDLRDEPFVFITRPVWPALYDTILSLCREVGFSPRIVQEATEYQTVMGL
CCCCCCCCEEHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VAAGIGITVIPVSANKLYKTEVVYKELYDSNFVAEMSVAYKKMNSNPELLEFLKIAREKK
HHHCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RIEVEDEIN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7685336; 9353933; 9384377 [H]