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The map label for this gene is ydeB [H]

Identifier: 118478884

GI number: 118478884

Start: 3481256

End: 3481759

Strand: Reverse

Name: ydeB [H]

Synonym: BALH_3283

Alternate gene names: 118478884

Gene position: 3481759-3481256 (Counterclockwise)

Preceding gene: 118478885

Following gene: 118478883

Centisome position: 66.23

GC content: 32.54

Gene sequence:

>504_bases
GTGTTAAGCTTGAGAAGGTTACCATATATGGAGGTGGATTATTTGTTTCAAATTGGCGATAACATTGTTTATCCAATGCA
AGGAGCAGGTATAATTAAAGCCATAGAAGAGAAGGAAATCGCAGGGGAAAAACAACAGTATTATGTTATAAAAATGTCGG
CTAGTAATATGGAAATAATGATTCCTGAAGGGAAAATATTGAATTCAAATATACGACCAGTTACAGATATCAAGGCATTA
ATACACATAATAGATATTTTTCAGCATGGAGAATCAGATAGATTACTTACATGGAAACAAAGGTATAAAGTGAACACTGA
TAAAATAAAAACGGGTAAAATGCAAGAAGGTGCTGAGGTTGTGCGTGATTTAATGCGTATACAGAAAGAAAAGGCACTTA
ATGCAAGCGAAAAGAAAATGTTAGATAACGCACATGAATTTTTGATTAGTGAACTGGGATTAATTGAAGGTATCACAGAA
AATCAAATAAAAAGCTTTTGTTAA

Upstream 100 bases:

>100_bases
TTTTATAGTGTATTGTGTGAATTTAATTTCTTGCTTTTGAAGTATTGACGTGTAAAATAATTTTATGATAAAATAAAAAT
TTTGCTAAAAAACTAAAGTT

Downstream 100 bases:

>100_bases
GGTTCATTACAAATAATATATGGCATCCCAAAAAAGATCTTGAATTTTTTGGGAGTATAATTATAGAGAATTAATCATTT
CAAAGACATTCAACTCTTTC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLSLRRLPYMEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDIKAL
IHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITE
NQIKSFC

Sequences:

>Translated_167_residues
MLSLRRLPYMEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDIKAL
IHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITE
NQIKSFC
>Mature_167_residues
MLSLRRLPYMEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIMIPEGKILNSNIRPVTDIKAL
IHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEVVRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITE
NQIKSFC

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19233; Mature: 19233

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLRRLPYMEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIM
CCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE
IPEGKILNSNIRPVTDIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEV
ECCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHH
VRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MLSLRRLPYMEVDYLFQIGDNIVYPMQGAGIIKAIEEKEIAGEKQQYYVIKMSASNMEIM
CCCCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE
IPEGKILNSNIRPVTDIKALIHIIDIFQHGESDRLLTWKQRYKVNTDKIKTGKMQEGAEV
ECCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHH
VRDLMRIQKEKALNASEKKMLDNAHEFLISELGLIEGITENQIKSFC
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]