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The map label for this gene is ydhM [C]

Identifier: 118478697

GI number: 118478697

Start: 3271257

End: 3271847

Strand: Direct

Name: ydhM [C]

Synonym: BALH_3083

Alternate gene names: 118478697

Gene position: 3271257-3271847 (Clockwise)

Preceding gene: 118478691

Following gene: 118478699

Centisome position: 62.23

GC content: 33.84

Gene sequence:

>591_bases
ATGACTAAAGTTGATACGGTAAAAGAAAAGATTATTGAAACATCTTTATATTTATTTAATACTAATGGGATAACTCGCAC
ATCCATTCAGGATATAATGACAGCTACTGAACTACCGAAAGGGTCTATTTATCGTAGATTCAAAAATAAAGAAGAAATTG
TCCTTGCTGCCTACGACAAAAGTGGTGAGATTATGTGGGGGCATTTTCATAAAGCAATGGAAAATAAAAAGACAGCAATC
GATAAAATCCTTGCAATTTTCCTTGTATATCAAGATGCAGCTAATAACCCTCCTATTGCTGGAGGTTGTCCATTGCTTAA
TAGCGCAATTGAAAGTACTGGCGTATTTCCAGAATTACAAAAAGCAGCAGCAAAAGGTTATGATGATACAGTAATGTTAA
TGGCTTCTCTCATTAAAGAAGGAATAGAGAAACATGAACTTAAAGAAGAGATAGACATTAGATCGCTCGCTTCTTTTCTT
GCCTCTTCAATGGAGGGCGCTATTATGGCAAGTCGTGTATCTAACGATAATATACATCATCATTATTTTATTGAACAAAT
AAAACATCATCTTTTCTCTTATTCTAGATAA

Upstream 100 bases:

>100_bases
TACTATATTTTTGCTTCACACTTATTTATACTTACAAAAAAATAGAGGATAAACATTACCTGGAATATTAAGCTCGGTTT
TATTAGGAGGACTAGAAAGC

Downstream 100 bases:

>100_bases
GTGAGAACTTGCATTGCTTTTTTATAGACTTAAATTGAATACTCTTCCCATAAAAAGTATTTACTGTTTATGAGAAGGGT
ATTCGTTTTTAGCAACTGTA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWGHFHKAMENKKTAI
DKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKHELKEEIDIRSLASFL
ASSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSR

Sequences:

>Translated_196_residues
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWGHFHKAMENKKTAI
DKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKHELKEEIDIRSLASFL
ASSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSR
>Mature_195_residues
TKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDKSGEIMWGHFHKAMENKKTAID
KILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQKAAAKGYDDTVMLMASLIKEGIEKHELKEEIDIRSLASFLA
SSMEGAIMASRVSNDNIHHHYFIEQIKHHLFSYSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22053; Mature: 21921

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDK
CCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECC
SGEIMWGHFHKAMENKKTAIDKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHH
KAAAKGYDDTVMLMASLIKEGIEKHELKEEIDIRSLASFLASSMEGAIMASRVSNDNIHH
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHH
HYFIEQIKHHLFSYSR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKVDTVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEIVLAAYDK
CCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECC
SGEIMWGHFHKAMENKKTAIDKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHH
KAAAKGYDDTVMLMASLIKEGIEKHELKEEIDIRSLASFLASSMEGAIMASRVSNDNIHH
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHH
HYFIEQIKHHLFSYSR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10475962; 12004073 [H]