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The map label for this gene is yijO [H]

Identifier: 118478572

GI number: 118478572

Start: 3135499

End: 3136326

Strand: Reverse

Name: yijO [H]

Synonym: BALH_2949

Alternate gene names: 118478572

Gene position: 3136326-3135499 (Counterclockwise)

Preceding gene: 118478574

Following gene: 118478571

Centisome position: 59.66

GC content: 37.56

Gene sequence:

>828_bases
GTGAAGTTGGACGTGAATGAGTTAGCAGAGTATCTTGCCAATACTCCTTTCCGAGTAGAAGGAGTATATCGTTATGCTAA
AAATCCAGGTGTGCCTTGTGCTGAGTCTACAGATTCTTTCCCAGGATTTGTATTTCCACTTACAGGGAAGACGCAATTTC
AATTTAATGGTACGCCGTATACCCTTTCCCCAGGAAAAGTTATACATGGGGGTGCAAAAATGACATTAGCCCATAAAATG
CTTGGTGAAATAAACTGGGAATATATTCTTGTTTTATATCGGATAAGCAATTCAGAACGAGAAGACTCTGGCTTTACTCA
TCAACATTTTGAATTATTAACAGGACAATCTCCTCGTCTTGTCGAATTACTTATGCGTCTTTGGGATGTGTATAATCAGC
GTGGAGGCATTTCGATGTTTCAGACCGAAATGCTATTTCGCGAAGCGTTGAATGAAGCTTTATTAAGTGTTGTCAATAGA
GAAAACAACTATGAGTCGCATACTTTGTTCGAGCGAATATCTAGCTACGTTCGTAAATACTATTATAAAGATATTACAAT
TCATACACTTACAGAACAAAATAATGTTAATCGAAATCGTCTTTCTTACGTGTTTAGAAAGCATGCAGGTATGGGGCCAG
CAGAATATTTATTGAACTATCGTATAAAGATGGCTCAAAAAATGTTATGTACAAGTGGTGTGCCTGTACAACAAATTGCG
CAGGCTGTTGGAATCACAGACCCTTTTTATTTTAGTAGAGTTTTCAAGAAGCGAGTTGGCATTTCGCCTACTAAATATCG
TGAGAAGTTCATCAATAATCCATACTAA

Upstream 100 bases:

>100_bases
TTAAGTCGTATGTACTATTTTTAGTTTAGCGTTGCCCAGAATGTACACCAATTAATCTCACGAATTACAAGAAAACTATT
ATTGAAATGAGGCTTGCATT

Downstream 100 bases:

>100_bases
TATCAACAGGGGTCCATTCTTATTTGAAAATCACTGTTCTATACTTATGGAGAGTTAAAGGAAACATTGGATTGAAAGTA
CTTTCATTGAAATCACTCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTQFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVRKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIA
QAVGITDPFYFSRVFKKRVGISPTKYREKFINNPY

Sequences:

>Translated_275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTQFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVRKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIA
QAVGITDPFYFSRVFKKRVGISPTKYREKFINNPY
>Mature_275_residues
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTQFQFNGTPYTLSPGKVIHGGAKMTLAHKM
LGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNR
ENNYESHTLFERISSYVRKYYYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIA
QAVGITDPFYFSRVFKKRVGISPTKYREKFINNPY

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=282, Percent_Identity=25.177304964539, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786251, Length=138, Percent_Identity=26.8115942028986, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31880; Mature: 31880

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTQFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCE
TLSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVRKY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIA
HHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVGITDPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKLDVNELAEYLANTPFRVEGVYRYAKNPGVPCAESTDSFPGFVFPLTGKTQFQFNGTPY
CCCCHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCE
TLSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFELLTGQSPRL
EECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCHH
VELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVRKY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
YYKDITIHTLTEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIA
HHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVGITDPFYFSRVFKKRVGISPTKYREKFINNPY
HHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]