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The map label for this gene is sdhB [H]

Identifier: 118478558

GI number: 118478558

Start: 3118456

End: 3119154

Strand: Reverse

Name: sdhB [H]

Synonym: BALH_2934

Alternate gene names: 118478558

Gene position: 3119154-3118456 (Counterclockwise)

Preceding gene: 118478559

Following gene: 118478557

Centisome position: 59.33

GC content: 33.62

Gene sequence:

>699_bases
ATGAACATAAATGTAGCATCTATTAAAGAAAAAAAGGTTGTTAAATACAAAAGCTGTTTTGACGTGATTGGTCCGGTAAT
GATAGGTCCTTCGAGTTCACATACTGCAGGGGCTTTGGCTATTGGAGCAGTTGCAAATAAATTATTTCAAGGTCTTCCAA
AAAAAGTCGTGGTTAGGTATTATGAATCATTTGCTGAAACCCATAAAGGACATGGAACTGATTTTGCGATTATTGCTGGG
ATATTAGGATTTGCAGCCGATGACAGCAAAGTGCCAGATGCTATTAAAATAGCAAAATCTAAAGGGATTGATATTACTTT
TATTGAAAAATCAGGTGATAGTCCTGCCGGTCATCCAAATACGGCAGATGTATATTTAGAGGATGACAGTCGAAGTATTA
GAACAATGGGTATTTCGGTTGGTGGTGGATTAATTGAAATTAAACATGTTGAAATTGACGGATTTAGCTTAGAACTGAAG
GGGCCATTGCCAGTTGTTATTGCGATTTCAGAAAGAGCTGACTTTGAATTTATCTTACGCAGGATCTTTAAACAATATGA
TATGGAAATTAATAATTTTTATAGTTTGGAAGAAAATAGAAATTTTTTATTTGTATTCGCATTAGATTCAATATTGCCTG
TTAATATTCAGGAGGAGTTAAGAAATTTAAGCAATATAGCTAATCTTATTATTCTTTAG

Upstream 100 bases:

>100_bases
AAAAAAGAAAGCGCTATCAAACGGATCTTATTTTAAATTGATCATTCTAATAACTTAGATTCAACAGCAATTAAAAATAA
TAAACTATGGGGGTGTTTAT

Downstream 100 bases:

>100_bases
TTACATTAAGGAGTGAAAAAATATGTATATGTCCATAAAAGAAATTGTGGATGCAGCTAATAAAAGCCAAAAGCCAATTT
ATGAATTAGCAATTGAACAG

Product: L-serine ammonia-lyase

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNINVASIKEKKVVKYKSCFDVIGPVMIGPSSSHTAGALAIGAVANKLFQGLPKKVVVRYYESFAETHKGHGTDFAIIAG
ILGFAADDSKVPDAIKIAKSKGIDITFIEKSGDSPAGHPNTADVYLEDDSRSIRTMGISVGGGLIEIKHVEIDGFSLELK
GPLPVVIAISERADFEFILRRIFKQYDMEINNFYSLEENRNFLFVFALDSILPVNIQEELRNLSNIANLIIL

Sequences:

>Translated_232_residues
MNINVASIKEKKVVKYKSCFDVIGPVMIGPSSSHTAGALAIGAVANKLFQGLPKKVVVRYYESFAETHKGHGTDFAIIAG
ILGFAADDSKVPDAIKIAKSKGIDITFIEKSGDSPAGHPNTADVYLEDDSRSIRTMGISVGGGLIEIKHVEIDGFSLELK
GPLPVVIAISERADFEFILRRIFKQYDMEINNFYSLEENRNFLFVFALDSILPVNIQEELRNLSNIANLIIL
>Mature_232_residues
MNINVASIKEKKVVKYKSCFDVIGPVMIGPSSSHTAGALAIGAVANKLFQGLPKKVVVRYYESFAETHKGHGTDFAIIAG
ILGFAADDSKVPDAIKIAKSKGIDITFIEKSGDSPAGHPNTADVYLEDDSRSIRTMGISVGGGLIEIKHVEIDGFSLELK
GPLPVVIAISERADFEFILRRIFKQYDMEINNFYSLEENRNFLFVFALDSILPVNIQEELRNLSNIANLIIL

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 25418; Mature: 25418

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINVASIKEKKVVKYKSCFDVIGPVMIGPSSSHTAGALAIGAVANKLFQGLPKKVVVRY
CCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
YESFAETHKGHGTDFAIIAGILGFAADDSKVPDAIKIAKSKGIDITFIEKSGDSPAGHPN
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC
TADVYLEDDSRSIRTMGISVGGGLIEIKHVEIDGFSLELKGPLPVVIAISERADFEFILR
CEEEEEECCCCEEEEEEEEECCCEEEEEEEEECCEEEEECCCCEEEEEECCCCCHHHHHH
RIFKQYDMEINNFYSLEENRNFLFVFALDSILPVNIQEELRNLSNIANLIIL
HHHHHHCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNINVASIKEKKVVKYKSCFDVIGPVMIGPSSSHTAGALAIGAVANKLFQGLPKKVVVRY
CCCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
YESFAETHKGHGTDFAIIAGILGFAADDSKVPDAIKIAKSKGIDITFIEKSGDSPAGHPN
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC
TADVYLEDDSRSIRTMGISVGGGLIEIKHVEIDGFSLELKGPLPVVIAISERADFEFILR
CEEEEEECCCCEEEEEEEEECCCEEEEEEEEECCEEEEECCCCEEEEEECCCCCHHHHHH
RIFKQYDMEINNFYSLEENRNFLFVFALDSILPVNIQEELRNLSNIANLIIL
HHHHHHCCCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]