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The map label for this gene is degU [H]

Identifier: 118478475

GI number: 118478475

Start: 3017035

End: 3017649

Strand: Direct

Name: degU [H]

Synonym: BALH_2847

Alternate gene names: 118478475

Gene position: 3017035-3017649 (Clockwise)

Preceding gene: 118478474

Following gene: 118478491

Centisome position: 57.39

GC content: 29.27

Gene sequence:

>615_bases
ATGATTCCTATAAACATTTTATTAATAGATGATCACGCTTTGTTTGCAAAAAGCTTGGAAATAGCCTTAGAAGATTATCC
TGAAATAGATGCATTTCACTCATTACAAAATATCGAAAATGTCATTACAATGATCAAACAATTTAAACCAGATATTATCT
TATTAGATATTAATTTAAGCAATATCAGTAGTGAAGATGGTTTGGAAGTAGCTAAAATGATTTTGGATAGTAAATGTAAT
ACAAAAATAGTTATACTAACCGGTTATGATTTACCTGTTTACCAGTATGAAGCTCAGAAACTAGGTGTAAGTGGTTTCAT
CAATAAAAATATTTTACCTGAAGTATTGGTGCAAATATTAAATGACATTAATAAAGGCGCATTTCATTTTCCAACCTCTA
CTGAAATAATTGAAGAATTAACTCATAGTGAGAAACAAATTTTACAATTACTATGTGATGGCTATAAGCGTAAAGAAATT
GCTTCCATGCTATACGCTAGCGAACGTACAATCTCTAATCACATTCAACACGTATTTGATAAATTAAACGTTTCCTCTTC
TTTAGAAGCTGTTACGAAGGGAATAAAATTAGGTTATATTCAGCCAGATTATTAA

Upstream 100 bases:

>100_bases
TCAATTAAAGAACAGCTACTTTTATTGAATGGTGAAATGACCATTTCAAATAGTAATCCTTCTGGTTTATGCATTACTAT
TTTTATTCCGATGAAAGGAG

Downstream 100 bases:

>100_bases
TAAAACATGATATACAAAAGAAGAGCCAATTCACATGAATTGGCTCTTTCTTATCGTATAAAATCTCAATAGTTACACTA
GCTAGATTTTATTTCTGTAA

Product: salavaricin two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIPINILLIDDHALFAKSLEIALEDYPEIDAFHSLQNIENVITMIKQFKPDIILLDINLSNISSEDGLEVAKMILDSKCN
TKIVILTGYDLPVYQYEAQKLGVSGFINKNILPEVLVQILNDINKGAFHFPTSTEIIEELTHSEKQILQLLCDGYKRKEI
ASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGYIQPDY

Sequences:

>Translated_204_residues
MIPINILLIDDHALFAKSLEIALEDYPEIDAFHSLQNIENVITMIKQFKPDIILLDINLSNISSEDGLEVAKMILDSKCN
TKIVILTGYDLPVYQYEAQKLGVSGFINKNILPEVLVQILNDINKGAFHFPTSTEIIEELTHSEKQILQLLCDGYKRKEI
ASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGYIQPDY
>Mature_204_residues
MIPINILLIDDHALFAKSLEIALEDYPEIDAFHSLQNIENVITMIKQFKPDIILLDINLSNISSEDGLEVAKMILDSKCN
TKIVILTGYDLPVYQYEAQKLGVSGFINKNILPEVLVQILNDINKGAFHFPTSTEIIEELTHSEKQILQLLCDGYKRKEI
ASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGYIQPDY

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=27.7227722772277, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=25.2380952380952, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786747, Length=204, Percent_Identity=24.5098039215686, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790102, Length=196, Percent_Identity=23.469387755102, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23049; Mature: 23049

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPINILLIDDHALFAKSLEIALEDYPEIDAFHSLQNIENVITMIKQFKPDIILLDINLS
CCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
NISSEDGLEVAKMILDSKCNTKIVILTGYDLPVYQYEAQKLGVSGFINKNILPEVLVQIL
CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHCCCHHCCCCCHHHHHHHHHH
NDINKGAFHFPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFD
HHCCCCCEECCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLNVSSSLEAVTKGIKLGYIQPDY
HHCCCHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure
MIPINILLIDDHALFAKSLEIALEDYPEIDAFHSLQNIENVITMIKQFKPDIILLDINLS
CCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
NISSEDGLEVAKMILDSKCNTKIVILTGYDLPVYQYEAQKLGVSGFINKNILPEVLVQIL
CCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHCCCHHCCCCCHHHHHHHHHH
NDINKGAFHFPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFD
HHCCCCCEECCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLNVSSSLEAVTKGIKLGYIQPDY
HHCCCHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]