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The map label for this gene is ydfD [H]

Identifier: 118478372

GI number: 118478372

Start: 2901565

End: 2903037

Strand: Direct

Name: ydfD [H]

Synonym: BALH_2736

Alternate gene names: 118478372

Gene position: 2901565-2903037 (Clockwise)

Preceding gene: 118478370

Following gene: 118478373

Centisome position: 55.19

GC content: 38.97

Gene sequence:

>1473_bases
ATGTATATAAGAGTTACGGAGGCGTTTTTTATGGAATGGAAGCTAGATAGCGACAGTAAAATCCCTATTTATCAGCAAGT
TGTTGACTTTATTGAAAAACGTATTACATACGGGGAACTTCCTCCAGGTAGCTTCCTACCTTCTGAACGGAAATTAGCTA
CACAGTTAAATGTAAACCGTAGTACGGTAACGACTGCTTATAATGAATTACGTGCTATGGGAATTGTAGAAAGTACGACT
GGTAAAGGAACACGCGTGAGTACACATATGTGGGGCGTTTCTCCGACATTAACGCCGAACTGGAGGAATTTCGTGGAAGG
CGGTACGTTCTTACCAAACTTGCCGTTACTTCGCCATATTCGGGCAGAAGTACAACAAAATGAAAATATTATTGATTTTG
CAAACGGAGAACTCGGTTGTAATCTCTATCCTCACGATCAACTACAAACGATTTTACGAGAACAACCGTTAACGCACTCA
TTAAGTTACGATCATCCGCAAGGGTACCTCCCGCTAAGACAAGCGGTAGTAAAATATATGAAAGAATATTTAAAAGTTGA
AGCGACTGAACAATCCATTATGATTACATCTGGCGCACAGCAAGCACTTCACCTTATCGTACAATGTTTATTAAATCCAG
GTGATGCCGTCGCTTTCGAAAGTCCTTCACACTGTTATTCCTTACCGTTATTCCAATCAGCGGGTATTCGTATTTTCCCG
TTACCTGTCGATGAACACGGTATTAATCCAGACGATGTGCAAGAATTATATAGAAAGCATCGTATTAAAATGATCTTTTT
AAATCCAAACTTCCAAAATCCTACAGGCACAATGCTGCATCCAAACCGTAGAAAAAAATTATTATCACTTTGTGCAGACT
TACGAATTGCGATTGTGGAAGATGATCCGTCTAGTTTACTTACGTTAGAAAAAAAACAACCTTGCCCTACTTTGAAATCA
ATAGATGAAAATGGAACTGTTATCTATGTACATTCTTTATCAAAAATGATTGCACCGGGATTACGAGTTGGTTGGCTTGT
CGCCCCGCAATCGGTAGTAGAAAGGTTATCTGACGCACGACATCAAATGGAGTTAGGTATGAGCATTTTCCCGCAGTGGC
TTATGCAGCAATTTTTCGAAACTGTACCATTTCAATCGCATATCGTACCGTTACGAAAACAACTCGCAGAAAAAAGAGAC
GTTATCGTTCGCGCCTTAAATGAGCAACTTCACGATAAAATCTCTTTTTCAAATCCAACCGGCGGTATATACATATGGGG
AAAATTAAAAGAACCGATAAACGAAAAACAACTTATTATGCAAAGCTTAAAACAAGAAATCGCCTTTATGCCGGGAAGTA
TTTTCGGCGCGAAAGATGGTTATATTCGTTTATCTTATGGAAAAGTGAATATTGATCAAATTGAGGAAGGTATTTCTCGT
TTGCGTGAGGCTATTTTGGTTTGTGAAAAGTAA

Upstream 100 bases:

>100_bases
TTCATCCGAATCTCCCCTTCCATATTTAGCATAGTAAAATTGGCTGGATATAACACCATCCAATTGGCTGTTTTTTTACC
CAGCCAATTTGTTATACTGA

Downstream 100 bases:

>100_bases
CTTTAGATACAAACCCTCGTTTGACAAAACCTAAATCTACCATTATTATCAACACGAACCTAGTTTTAGGAGTGATAAAA
ATGAAAATTTACGTTGATGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MYIRVTEAFFMEWKLDSDSKIPIYQQVVDFIEKRITYGELPPGSFLPSERKLATQLNVNRSTVTTAYNELRAMGIVESTT
GKGTRVSTHMWGVSPTLTPNWRNFVEGGTFLPNLPLLRHIRAEVQQNENIIDFANGELGCNLYPHDQLQTILREQPLTHS
LSYDHPQGYLPLRQAVVKYMKEYLKVEATEQSIMITSGAQQALHLIVQCLLNPGDAVAFESPSHCYSLPLFQSAGIRIFP
LPVDEHGINPDDVQELYRKHRIKMIFLNPNFQNPTGTMLHPNRRKKLLSLCADLRIAIVEDDPSSLLTLEKKQPCPTLKS
IDENGTVIYVHSLSKMIAPGLRVGWLVAPQSVVERLSDARHQMELGMSIFPQWLMQQFFETVPFQSHIVPLRKQLAEKRD
VIVRALNEQLHDKISFSNPTGGIYIWGKLKEPINEKQLIMQSLKQEIAFMPGSIFGAKDGYIRLSYGKVNIDQIEEGISR
LREAILVCEK

Sequences:

>Translated_490_residues
MYIRVTEAFFMEWKLDSDSKIPIYQQVVDFIEKRITYGELPPGSFLPSERKLATQLNVNRSTVTTAYNELRAMGIVESTT
GKGTRVSTHMWGVSPTLTPNWRNFVEGGTFLPNLPLLRHIRAEVQQNENIIDFANGELGCNLYPHDQLQTILREQPLTHS
LSYDHPQGYLPLRQAVVKYMKEYLKVEATEQSIMITSGAQQALHLIVQCLLNPGDAVAFESPSHCYSLPLFQSAGIRIFP
LPVDEHGINPDDVQELYRKHRIKMIFLNPNFQNPTGTMLHPNRRKKLLSLCADLRIAIVEDDPSSLLTLEKKQPCPTLKS
IDENGTVIYVHSLSKMIAPGLRVGWLVAPQSVVERLSDARHQMELGMSIFPQWLMQQFFETVPFQSHIVPLRKQLAEKRD
VIVRALNEQLHDKISFSNPTGGIYIWGKLKEPINEKQLIMQSLKQEIAFMPGSIFGAKDGYIRLSYGKVNIDQIEEGISR
LREAILVCEK
>Mature_490_residues
MYIRVTEAFFMEWKLDSDSKIPIYQQVVDFIEKRITYGELPPGSFLPSERKLATQLNVNRSTVTTAYNELRAMGIVESTT
GKGTRVSTHMWGVSPTLTPNWRNFVEGGTFLPNLPLLRHIRAEVQQNENIIDFANGELGCNLYPHDQLQTILREQPLTHS
LSYDHPQGYLPLRQAVVKYMKEYLKVEATEQSIMITSGAQQALHLIVQCLLNPGDAVAFESPSHCYSLPLFQSAGIRIFP
LPVDEHGINPDDVQELYRKHRIKMIFLNPNFQNPTGTMLHPNRRKKLLSLCADLRIAIVEDDPSSLLTLEKKQPCPTLKS
IDENGTVIYVHSLSKMIAPGLRVGWLVAPQSVVERLSDARHQMELGMSIFPQWLMQQFFETVPFQSHIVPLRKQLAEKRD
VIVRALNEQLHDKISFSNPTGGIYIWGKLKEPINEKQLIMQSLKQEIAFMPGSIFGAKDGYIRLSYGKVNIDQIEEGISR
LREAILVCEK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=315, Percent_Identity=28.2539682539683, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI33469970, Length=315, Percent_Identity=28.2539682539683, Blast_Score=135, Evalue=6e-32,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=25.4464285714286, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1790797, Length=485, Percent_Identity=27.8350515463918, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1788722, Length=390, Percent_Identity=23.5897435897436, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6321236, Length=401, Percent_Identity=21.6957605985037, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI21356535, Length=388, Percent_Identity=22.680412371134, Blast_Score=105, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 55774; Mature: 55774

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIRVTEAFFMEWKLDSDSKIPIYQQVVDFIEKRITYGELPPGSFLPSERKLATQLNVNR
CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCH
STVTTAYNELRAMGIVESTTGKGTRVSTHMWGVSPTLTPNWRNFVEGGTFLPNLPLLRHI
HHHHHHHHHHHHHCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHH
RAEVQQNENIIDFANGELGCNLYPHDQLQTILREQPLTHSLSYDHPQGYLPLRQAVVKYM
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
KEYLKVEATEQSIMITSGAQQALHLIVQCLLNPGDAVAFESPSHCYSLPLFQSAGIRIFP
HHHHHEECCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCEEEE
LPVDEHGINPDDVQELYRKHRIKMIFLNPNFQNPTGTMLHPNRRKKLLSLCADLRIAIVE
CCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
DDPSSLLTLEKKQPCPTLKSIDENGTVIYVHSLSKMIAPGLRVGWLVAPQSVVERLSDAR
CCCCCEEEECCCCCCCHHHCCCCCCCEEEEECHHHHHCCCCCEEEEECCHHHHHHHHHHH
HQMELGMSIFPQWLMQQFFETVPFQSHIVPLRKQLAEKRDVIVRALNEQLHDKISFSNPT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GGIYIWGKLKEPINEKQLIMQSLKQEIAFMPGSIFGAKDGYIRLSYGKVNIDQIEEGISR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
LREAILVCEK
HHHHHHHCCC
>Mature Secondary Structure
MYIRVTEAFFMEWKLDSDSKIPIYQQVVDFIEKRITYGELPPGSFLPSERKLATQLNVNR
CEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCH
STVTTAYNELRAMGIVESTTGKGTRVSTHMWGVSPTLTPNWRNFVEGGTFLPNLPLLRHI
HHHHHHHHHHHHHCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHH
RAEVQQNENIIDFANGELGCNLYPHDQLQTILREQPLTHSLSYDHPQGYLPLRQAVVKYM
HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
KEYLKVEATEQSIMITSGAQQALHLIVQCLLNPGDAVAFESPSHCYSLPLFQSAGIRIFP
HHHHHEECCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCEEEE
LPVDEHGINPDDVQELYRKHRIKMIFLNPNFQNPTGTMLHPNRRKKLLSLCADLRIAIVE
CCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEE
DDPSSLLTLEKKQPCPTLKSIDENGTVIYVHSLSKMIAPGLRVGWLVAPQSVVERLSDAR
CCCCCEEEECCCCCCCHHHCCCCCCCEEEEECHHHHHCCCCCEEEEECCHHHHHHHHHHH
HQMELGMSIFPQWLMQQFFETVPFQSHIVPLRKQLAEKRDVIVRALNEQLHDKISFSNPT
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GGIYIWGKLKEPINEKQLIMQSLKQEIAFMPGSIFGAKDGYIRLSYGKVNIDQIEEGISR
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
LREAILVCEK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]