Click here to switch to the map view.

The map label for this gene is rocC [H]

Identifier: 118478320

GI number: 118478320

Start: 2847200

End: 2848636

Strand: Direct

Name: rocC [H]

Synonym: BALH_2683

Alternate gene names: 118478320

Gene position: 2847200-2848636 (Clockwise)

Preceding gene: 118478317

Following gene: 118478324

Centisome position: 54.16

GC content: 36.19

Gene sequence:

>1437_bases
GTGAGGAAAACAATGGCGCAAGTAAATAATACAAACAATGAATTAAAACGTACGATGAAAAGTAGACACTTATTCATGAT
TGCACTCGGTGGTGTGATTGGAACGGGATTATTTAACGGATCTGGCTTTATTATAAGTCAAGCTGGACCTGGTGGATCCG
TACTTGCCTTTATGGCTGGTGGATTATTAATGTATTTCGTTATGCTTTGTCTTGGTGAACTTGCTGTAGCTATGCCTGTT
TCAGGTTCTTTTCAGGAATATGCAACTAAGTTCATCAATCCTGCAACTGGCTTTACAATCGGCTGGTTATATTGGTTAAG
CTGGGCAAATACGACCGGTCTTGAATTTACAACTGCTGGCATTACAATGCAGCGCTGGTTCCCTGATATTCCTGTTTGGG
TTTGGTGTTTAATATTTGGTGTTACAATCTTCACGATTAATGCATTATCTGCTCGTAGTTATGCAGAAACAGAATTTTGG
TTTTCAAGTATAAAAGTATCTGCCATTATCGCTTTTATTATTCTTGGCGGCGCCGCTATGTTCGGTTTTATTGATTTAAA
AGGAGATGAACCAGCCCCATTATTATCAAATTTCGTAAATCATGGTGGTTTATTCCCAAATGGACTTGCAGCTATTCTAT
TAACAATGGTTACAGTCAATTATTCCTTCCAAGGTACAGAACTTGTCGGAATCGCTGCAGGTGAAAGTGAAGATCCAGCA
AAAACTTTACCTCGTTCTATTAGAAATATTATATGGCGCACGATGTTTTTCTTCGTCTTAGCAATCTTTGTTCTTGTTGC
TTTAATTCCTTGGGAAGAAGCAGGATTAACAAAAAGCCCGTTCGTTGCTGTTTTTGATAATATCGGTATTCCATATGCAG
CTGATATTATGAACTTTGTTATTCTTACAGCTGTTCTTTCTGTCGCAAACTCAGGACTTTACGCGGCAACTCGTATGCTT
TGGTCATTATCAAAAAATGAAATGGCTCCAGCCTTTTTAAAGAAATTATCATCACGAGGAATACCTCTAAACGCTTTAAT
TATGACAATTGCTATTTCTGCTTTTTCTCTTTTAACAAGCGTTGTAGCAGCTGAAACTGTTTACTTATGGTTAATTTCTA
TTTCTGGAGTCATTACAATCATTGTTTGGATGTCAATTTGTGTCTCTCAATTCTTTTTCCGTAAACATTATGTAGCAGAT
GGCGGAAAATTAGAAGACTTAAAATTTAAAACGCCACTTTATCCACTTGTACCTATTCTTGGTTTTGGATTGTATGGCAT
TATATTAATCAGTCTTATCTTTATTCCTGAACAACGACTTGGAATCTATTGCACTGTACCATTTATCATCTTTTGCTACA
CATACTATCACTTTAAAGTTAAGAAAAGAATTTCTACTAACAGTCAAAGTGAAACTAAAATTAGCGAGACTATATAA

Upstream 100 bases:

>100_bases
TTTTCTTTTTAATTATCTGAAAATTATAACAAGATTTCACATCACGGAATACATTCCATAATACGGAAAAACATCAAACT
TTATTCTATTAACTACGAAA

Downstream 100 bases:

>100_bases
TACTCTGCTTATATAAAAGACCGCACATGGCTTTTACTTCATGTGCGGTCTTTCATCCTTCTAATTCGCTTTAAAATTAT
ATAACGGCTTAATAATGTGT

Product: amino acid permease, arginine permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MRKTMAQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGFIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALIMTIAISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGKLEDLKFKTPLYPLVPILGFGLYGIILISLIFIPEQRLGIYCTVPFIIFCYTYYHFKVKKRISTNSQSETKISETI

Sequences:

>Translated_478_residues
MRKTMAQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGFIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALIMTIAISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGKLEDLKFKTPLYPLVPILGFGLYGIILISLIFIPEQRLGIYCTVPFIIFCYTYYHFKVKKRISTNSQSETKISETI
>Mature_478_residues
MRKTMAQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPV
SGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFW
FSSIKVSAIIAFIILGGAAMFGFIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFVILTAVLSVANSGLYAATRML
WSLSKNEMAPAFLKKLSSRGIPLNALIMTIAISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVAD
GGKLEDLKFKTPLYPLVPILGFGLYGIILISLIFIPEQRLGIYCTVPFIIFCYTYYHFKVKKRISTNSQSETKISETI

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=52.03426124197, Blast_Score=501, Evalue=1e-143,
Organism=Escherichia coli, GI1788480, Length=416, Percent_Identity=46.6346153846154, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1786789, Length=463, Percent_Identity=36.9330453563715, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI1789017, Length=455, Percent_Identity=38.2417582417582, Blast_Score=296, Evalue=3e-81,
Organism=Escherichia coli, GI1786302, Length=465, Percent_Identity=33.5483870967742, Blast_Score=285, Evalue=5e-78,
Organism=Escherichia coli, GI48994972, Length=444, Percent_Identity=36.7117117117117, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI1786602, Length=463, Percent_Identity=34.9892008639309, Blast_Score=258, Evalue=5e-70,
Organism=Escherichia coli, GI87081915, Length=410, Percent_Identity=35.1219512195122, Blast_Score=255, Evalue=4e-69,
Organism=Escherichia coli, GI1790653, Length=460, Percent_Identity=32.8260869565217, Blast_Score=245, Evalue=4e-66,
Organism=Escherichia coli, GI87081869, Length=238, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6320772, Length=441, Percent_Identity=35.1473922902494, Blast_Score=266, Evalue=7e-72,
Organism=Saccharomyces cerevisiae, GI6324061, Length=432, Percent_Identity=32.4074074074074, Blast_Score=246, Evalue=6e-66,
Organism=Saccharomyces cerevisiae, GI6324553, Length=406, Percent_Identity=35.2216748768473, Blast_Score=229, Evalue=9e-61,
Organism=Saccharomyces cerevisiae, GI6324059, Length=432, Percent_Identity=32.8703703703704, Blast_Score=228, Evalue=1e-60,
Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=35.1941747572816, Blast_Score=219, Evalue=9e-58,
Organism=Saccharomyces cerevisiae, GI6319824, Length=422, Percent_Identity=31.2796208530806, Blast_Score=215, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6320717, Length=429, Percent_Identity=30.3030303030303, Blast_Score=214, Evalue=3e-56,
Organism=Saccharomyces cerevisiae, GI6321629, Length=485, Percent_Identity=30.5154639175258, Blast_Score=209, Evalue=9e-55,
Organism=Saccharomyces cerevisiae, GI6320251, Length=421, Percent_Identity=31.1163895486936, Blast_Score=200, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6319542, Length=443, Percent_Identity=30.6997742663657, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6319543, Length=418, Percent_Identity=28.2296650717703, Blast_Score=196, Evalue=7e-51,
Organism=Saccharomyces cerevisiae, GI6324990, Length=447, Percent_Identity=29.7539149888143, Blast_Score=196, Evalue=8e-51,
Organism=Saccharomyces cerevisiae, GI6324924, Length=488, Percent_Identity=28.6885245901639, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6322967, Length=454, Percent_Identity=30.8370044052863, Blast_Score=192, Evalue=9e-50,
Organism=Saccharomyces cerevisiae, GI6321053, Length=419, Percent_Identity=28.6396181384248, Blast_Score=192, Evalue=9e-50,
Organism=Saccharomyces cerevisiae, GI6324981, Length=488, Percent_Identity=29.5081967213115, Blast_Score=173, Evalue=4e-44,
Organism=Saccharomyces cerevisiae, GI6319608, Length=452, Percent_Identity=25, Blast_Score=158, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6320364, Length=94, Percent_Identity=39.3617021276596, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52630; Mature: 52630

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTMAQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAG
CCCHHHHHCCCHHHHHHHHHHCCEEEEEHHHHHHHCEECCCCEEEECCCCCCHHHHHHHH
GLLMYFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECC
ITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSIKVSAIIAFIILGGAAM
EEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
HEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH
ILTAVLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALIMTIAISAFSLLTS
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGKLEDLKFKTPLYPLVPIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
GFGLYGIILISLIFIPEQRLGIYCTVPFIIFCYTYYHFKVKKRISTNSQSETKISETI
HHHHHHHHHHHHHHCCCHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
>Mature Secondary Structure
MRKTMAQVNNTNNELKRTMKSRHLFMIALGGVIGTGLFNGSGFIISQAGPGGSVLAFMAG
CCCHHHHHCCCHHHHHHHHHHCCEEEEEHHHHHHHCEECCCCEEEECCCCCCHHHHHHHH
GLLMYFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECC
ITMQRWFPDIPVWVWCLIFGVTIFTINALSARSYAETEFWFSSIKVSAIIAFIILGGAAM
EEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPA
HEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
KTLPRSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNIGIPYAADIMNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH
ILTAVLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNALIMTIAISAFSLLTS
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGKLEDLKFKTPLYPLVPIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
GFGLYGIILISLIFIPEQRLGIYCTVPFIIFCYTYYHFKVKKRISTNSQSETKISETI
HHHHHHHHHHHHHHCCCHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]