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The map label for this gene is ywqM [H]

Identifier: 118477825

GI number: 118477825

Start: 2318700

End: 2319590

Strand: Reverse

Name: ywqM [H]

Synonym: BALH_2165

Alternate gene names: 118477825

Gene position: 2319590-2318700 (Counterclockwise)

Preceding gene: 118477828

Following gene: 118477823

Centisome position: 44.12

GC content: 33.67

Gene sequence:

>891_bases
ATGATAATAAAAGAGGGATTGCTTATGGAAATGAGACATGTTAAAACATTTTGTGCGATTGTTAAGTATGGTAGTTTTTC
TAAAGCTGCCCATGCATTAGGTTATGCGCAATCTACAGTTACAGCGCATATGAAAGCATTAGAGAACGATTTACATATTC
CTCTTTTCGATCGGTTAGGAAAAAAAGTACTTCTTACAAAAGCAGGTCATCAATTTCATCCTTATGCTTTAGAATTACTT
GCAATTTATGAAAAGGCGCAAGAAATCCCTCAAAATACCGATCAATTAGAAGGTACATTGAGTATTACATCAAACGAATC
ATTAGCGGTATATCGTTTACCACAATTATTACGTACTTACAAACAGAAAAATCCGAAAGTAAATATCGTGCTTGAAACAA
ACACAAATGAACAAGCATTACAAAAATTACATGAAGGAGAAACAGACGTTGTCTTCATAATTGGAGAAAGTATAGAACAT
AATGATTTTATTACGTGTACTTTTAGTAATGAAACATTTGGATGGATTTTACCACCCCATTATTCTACACACTCTAATCC
GTTTTGTTTATTAAAGGAAACCCAGTTTATTTTTACTGAACAAAGCTGCGGTTATAGACCGATGGTAGATCGTTTTTTAC
GTCAAAGCGAGAATATTCCAGCTAAAACATTTGAAACTTCCAACGTTGAAGTCATTAAACAATCCGTCATGTGTGAATTA
GGAATATCAATTCTACCTTACATCGTTGTACAAGAAAGTTGTCAAAAAGAACAACTCTGTTTTCAGCCTATTGAAACTCC
CACCGTTATTCAAAGCCATGTAATCTATCATAAATCTAGATGGATTTCACCCGTTTTACAATCGTTTCTTTCCTTGCTAG
AACGAGACTAA

Upstream 100 bases:

>100_bases
CTCCTCCAATATTAAATGAATAAATATTTCTACAATTTCATTTTATAAGGAATTTAATCATTTGGAAAATTGAAATACGT
GATATAATCATTCACAAATC

Downstream 100 bases:

>100_bases
AAGGTGCACACAAAAAAGAGTAACTGCCTAATAAGCACTTACTCTCTTCCAATGTTATCTTATCTATTAGCCTGTCCCCC
ACCTGCAATTAATTTACTAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MIIKEGLLMEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELL
AIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEH
NDFITCTFSNETFGWILPPHYSTHSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSENIPAKTFETSNVEVIKQSVMCEL
GISILPYIVVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD

Sequences:

>Translated_296_residues
MIIKEGLLMEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELL
AIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEH
NDFITCTFSNETFGWILPPHYSTHSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSENIPAKTFETSNVEVIKQSVMCEL
GISILPYIVVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
>Mature_296_residues
MIIKEGLLMEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELL
AIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEH
NDFITCTFSNETFGWILPPHYSTHSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSENIPAKTFETSNVEVIKQSVMCEL
GISILPYIVVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=313, Percent_Identity=27.4760383386581, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=27.4647887323944, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787806, Length=287, Percent_Identity=23.3449477351916, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788887, Length=291, Percent_Identity=25.085910652921, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=24.5733788395904, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=22.7642276422764, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=292, Percent_Identity=21.5753424657534, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=26.8707482993197, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790399, Length=263, Percent_Identity=22.8136882129278, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=25.1700680272109, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=27.4647887323944, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48994962, Length=241, Percent_Identity=25.7261410788382, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=289, Percent_Identity=23.8754325259516, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33877; Mature: 33877

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKEGLLMEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC
KKVLLTKAGHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTY
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHH
KQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTFSNETFGWILPPH
HHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCC
YSTHSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSENIPAKTFETSNVEVIKQSVMCEL
CCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHH
GISILPYIVVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
HHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIKEGLLMEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLG
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC
KKVLLTKAGHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTY
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHH
KQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIEHNDFITCTFSNETFGWILPPH
HHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCC
YSTHSNPFCLLKETQFIFTEQSCGYRPMVDRFLRQSENIPAKTFETSNVEVIKQSVMCEL
CCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHH
GISILPYIVVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
HHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]