| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is hemY [H]
Identifier: 118477816
GI number: 118477816
Start: 2310928
End: 2312382
Strand: Direct
Name: hemY [H]
Synonym: BALH_2156
Alternate gene names: 118477816
Gene position: 2310928-2312382 (Clockwise)
Preceding gene: 118477815
Following gene: 118477818
Centisome position: 43.96
GC content: 32.92
Gene sequence:
>1455_bases TTGGGTATAATAAGAAAGGAATTATTAATTGTATCGGTTAGGAGCGCAGCACATATGAAAACGGTTGTTGTTATCGGTGG AGGTATTACAGGACTTTCTACTATGTTTTATTTAGAGAAATTAAAAAAGGATTATAATATTGATTTGAATTTAATTCTTG TAGAAAAAGAAGAGTACTTAGGTGGTAAAATCCATAGTGTAGAAGAAAAGGATTTTATTATGGAATCAGGAGCGGATTCT ATTGTTGCACGTAATGAACATGTTATGCCACTTGTAAAAGATTTAAATTTACAAGAAGAAATGGTATATAATGAGACGGG TATTTCTTACATATATTCTGATAATACTTTACATCCAATTCCTTCTGACACTATATTTGGGATACCGATGAGTGTCGAAT CGTTGTTTAGCAGTACGCTAGTATCAACGAAGGGGAAAATTGTTGCTTTAAAAGATTTTATAACGAAAAATAAAGAGTTT ACAAAAGATACATCACTTGCTGTATTTTTAGAAAGCTTCTTAGGGAAAGAATTAGTAGAAAGACAAATTGCGCCAGTGCT TTCAGGCGTATATTCTGGTAAATTGAACGAGCTTACAATGGCATCTACATTACCATATTTACTGGACTATAAAAATAAAT ATGGAAGTATTATTAAAGGCTTTGAAGAGAATAAAAAACAGTTTCAATCAGCAGGAAACAAAAAGTTCGTATCATTTAAA GGTGGATTATCTACGATTATTGATCGTTTAGAAGAAATGCTGACTGAGACGGTTGTTAAGAAAGGTGCTGTAACGACAGC TGTAAGTAAACAAGGTGATCGCTATGCAATCTCTTTTGCAAATCACGATTCAATCCACGCTGATTATGTTGTTTTAGCAG CTCCGCATGATATCGCAGAAACTTTATTACAGTCTGATGAGTTAAACGAAGAGTTTCATACATTTAAAAACTCATCTCTT ATAAGTATTTACTTAGGATTTGACATACTAGATGAACAATTACCGGCGGACGGCACAGGATTTATCGTAACGGAAAACAG TGATTTACATTGTGATGCTTGTACATGGACAAGCCGGAAGTGGAAACATACATCTGGAAAACAAAAACTATTAGTGAGAA TTTTTTATAAGAGTACTAATCCAGTATATGAAACGATTAAAAGTTATAGTGAAGAAGAATTAGTACGGGTTGCTTTATAT GATATTGAAAAGAGTCTCGGAATTAAAGGTGAACCAGAAGTAGTTGAAGTGACAAATTGGAAAGATTTAATGCCGAAATA TCATTTAGAACATAATCAAGCGGTTCAAACATTACAAGAAAAAATGATGAATCTTTACCCGAATATATACTTGGCTGGCG CTTCCTATTATGGTGTTGGTATTGGTGCGTGTATTGGAAATGGAAAAAACATTGCAAATGAAATCATTGCAACATTAAAT GAACCATCAAATTAA
Upstream 100 bases:
>100_bases TGCTGGTCATTTAGTGCATAATGATCAACCGGAAATTTATTCGAATATATTGTCTAATTTCTTACAGAATGCGCAAGTTG CTAGTCGAATATAAGGACTT
Downstream 100 bases:
>100_bases TATAGAATAAATAAAATGTCCCTCCATTATAACGGAGGGACATTTTATTTATTTTACTTGAATTGAGACTTTTTTGTTAG TTGTATTATTCTCGGTAATT
Product: protoporphyrinogen oxidase
Products: NA
Alternate protein names: PPO [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MGIIRKELLIVSVRSAAHMKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADS IVARNEHVMPLVKDLNLQEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEF TKDTSLAVFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFK GGLSTIIDRLEEMLTETVVKKGAVTTAVSKQGDRYAISFANHDSIHADYVVLAAPHDIAETLLQSDELNEEFHTFKNSSL ISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRIFYKSTNPVYETIKSYSEEELVRVALY DIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQTLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNIANEIIATLN EPSN
Sequences:
>Translated_484_residues MGIIRKELLIVSVRSAAHMKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADS IVARNEHVMPLVKDLNLQEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEF TKDTSLAVFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFK GGLSTIIDRLEEMLTETVVKKGAVTTAVSKQGDRYAISFANHDSIHADYVVLAAPHDIAETLLQSDELNEEFHTFKNSSL ISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRIFYKSTNPVYETIKSYSEEELVRVALY DIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQTLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNIANEIIATLN EPSN >Mature_483_residues GIIRKELLIVSVRSAAHMKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSI VARNEHVMPLVKDLNLQEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFT KDTSLAVFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKG GLSTIIDRLEEMLTETVVKKGAVTTAVSKQGDRYAISFANHDSIHADYVVLAAPHDIAETLLQSDELNEEFHTFKNSSLI SIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRIFYKSTNPVYETIKSYSEEELVRVALYD IEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQTLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNIANEIIATLNE PSN
Specific function: Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. Also oxidizes the pathway intermediate coproporphyrinogen-III [H]
COG id: COG1232
COG function: function code H; Protoporphyrinogen oxidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the protoporphyrinogen oxidase family [H]
Homologues:
Organism=Homo sapiens, GI170650615, Length=493, Percent_Identity=24.9492900608519, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI4506001, Length=493, Percent_Identity=24.9492900608519, Blast_Score=112, Evalue=6e-25, Organism=Drosophila melanogaster, GI24649745, Length=476, Percent_Identity=23.5294117647059, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002937 - InterPro: IPR016040 - InterPro: IPR004572 [H]
Pfam domain/function: PF01593 Amino_oxidase [H]
EC number: =1.3.3.4 [H]
Molecular weight: Translated: 54060; Mature: 53928
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIIRKELLIVSVRSAAHMKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL CCCCHHHHEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHC GGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLQEEMVYNETGISYIYSDNTLHPI CCCEECCCHHHHHHHCCCCCEEECCCCCCHHHHCCCCHHHHHCCCCCCEEEEECCEECCC PSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLAVFLESFLGKELVE CCCCEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH RQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFK HHHHHHHHHHHCCCCCCEEHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GGLSTIIDRLEEMLTETVVKKGAVTTAVSKQGDRYAISFANHDSIHADYVVLAAPHDIAE CCHHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCEEEEEECCCCCCCCCEEEEECCHHHHH TLLQSDELNEEFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRK HHHHHHCCCHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCC WKHTSGKQKLLVRIFYKSTNPVYETIKSYSEEELVRVALYDIEKSLGIKGEPEVVEVTNW CCCCCCCCEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCH KDLMPKYHLEHNQAVQTLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNIANEIIATLN HHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHCC EPSN CCCC >Mature Secondary Structure GIIRKELLIVSVRSAAHMKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL CCCHHHHEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHC GGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLQEEMVYNETGISYIYSDNTLHPI CCCEECCCHHHHHHHCCCCCEEECCCCCCHHHHCCCCHHHHHCCCCCCEEEEECCEECCC PSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLAVFLESFLGKELVE CCCCEEECCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH RQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFK HHHHHHHHHHHCCCCCCEEHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC GGLSTIIDRLEEMLTETVVKKGAVTTAVSKQGDRYAISFANHDSIHADYVVLAAPHDIAE CCHHHHHHHHHHHHHHHHHHCCCCEEHHHCCCCEEEEEECCCCCCCCCEEEEECCHHHHH TLLQSDELNEEFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRK HHHHHHCCCHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCC WKHTSGKQKLLVRIFYKSTNPVYETIKSYSEEELVRVALYDIEKSLGIKGEPEVVEVTNW CCCCCCCCEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCH KDLMPKYHLEHNQAVQTLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNIANEIIATLN HHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHCC EPSN CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1459957; 9579061; 9384377; 8288631 [H]