| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is lytB [H]
Identifier: 118477284
GI number: 118477284
Start: 1742669
End: 1744081
Strand: Direct
Name: lytB [H]
Synonym: BALH_1595
Alternate gene names: 118477284
Gene position: 1742669-1744081 (Clockwise)
Preceding gene: 118477283
Following gene: 118477287
Centisome position: 33.15
GC content: 34.25
Gene sequence:
>1413_bases ATGAAAAAAGTTATTTCTAATGTGTTAGCAGTGACAGTCGCACTTCAAGTAGTGATGGCTCCAGCAACTTCGTTTGCAGC TGAAAAAGAATTTCCAGACGTTCCAAAAAATCATTGGTCATTTGAAGCAATTACTGATTTAACGTCCAAAGGGGTTATTG CAGGGTACGATAATGGTAAATTTGGCTTTGGAGATGTTGTAACTCGTGAGCAAGTAGCAGCATTAATGTATCGCGCATTA AAACCAGAAGCAAAAAGTGATTATAAAAATCCATACTCTGATATTAGCGCAGGAACGACAATGTTCCCAAAAGAAATTTT AGCATTAACAGATATGGGGATTTTCGTAGGTGATGATAAAGGGACGTTTAGACCGAAAGAATCATTAACTCGTGCTGAAA TGTCTGTTATTTTACAAAGAGCATTTCAATTAGAAGTAAAAGCACCACATACATTTAATGATATAGATGCATCACATTGG TGGGCAAAAGAAGCAATTAGTGCATTGCAATCTAATGGTGTATCAATAGGGAATGGGCTTGGAGGATTTGATCCATCAGG TGTATTAACGCGTGAAAGCTATGCACAACTATTATATAGAGCAATGCAAATTAAAAAAGATGTTCCTGTTGAACAACCAT CATATATTAATCTAGATGTGACATTACCATCTAACGTAACTGCGCAAGAGATTGATAATTTTATTAAAAAATCCCATGCA GATAGTCCGCTTATTGGAACGGGACAAGATTTTATTCAAGCACAAAATGAGTATGGTGTGAGTGCACTATATTTAGCTGC ACATGCAATCTTAGAATCTGCCTACGGTAAATCAGAAATTGCATATCGCAAACATAATTTATTTGGTTTAAGAGCGTACG ATCGTGACCCATTTGCATATGCAAAATATTTACCGTCATACAAGGAAAGTATTTCTTACAATGCTGATTATGTAAGAAAG AACTACTTAGAAAAAGGTGCTGATCATTTTAATGGTTACACATTACCTGCTATGAATATTAAGTATGCAACAGATAAAGA ATGGGCTGGCAAAATCGCTAATCTTATGGAGCGTATTAAACCGTTTAACAAAAAAGATTATGAAAATGTAAAACGATTAC CAAAGAATCCTAATACATTGAATGTAGAGGCATTAGGAAAAGAAATTCCATATAAAGATTATGTAAAAGATGCAACAGCT ACTGTTCAATTAGTAGGCTCTTACTACCAAGTACCATATCCATTTGGCTATACAATTAAGAGTGTACCAAATATTACACA AAATGAAGTTGGAAAATTAGAAAGTGGCAAGAAAGTAAATGTATATCGTGAAGATCCAAACGGTTGGGTGGAATTTTCAT TTGAAAATGCTCAAGAAAAATATTGGACATTGAAGAGTAACTTAAAAATATAA
Upstream 100 bases:
>100_bases TTGACTATTTAAAAGTTTGTTAGTTTAATAGGGTAAACTATACAATAAAGGGAGGCAAGTTAACACGGGACAAGCATATA CATAACGTGTTAAAAAAATT
Downstream 100 bases:
>100_bases ATAAAAAAGGTGTTTTCATTTATGAAAACACCTTTTTTATTTATATTCGCTAAGTAATATCCCATAGTATGTAAGATCAA TAGATTCACCATATTTGGCA
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Murein hydrolase [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MKKVISNVLAVTVALQVVMAPATSFAAEKEFPDVPKNHWSFEAITDLTSKGVIAGYDNGKFGFGDVVTREQVAALMYRAL KPEAKSDYKNPYSDISAGTTMFPKEILALTDMGIFVGDDKGTFRPKESLTRAEMSVILQRAFQLEVKAPHTFNDIDASHW WAKEAISALQSNGVSIGNGLGGFDPSGVLTRESYAQLLYRAMQIKKDVPVEQPSYINLDVTLPSNVTAQEIDNFIKKSHA DSPLIGTGQDFIQAQNEYGVSALYLAAHAILESAYGKSEIAYRKHNLFGLRAYDRDPFAYAKYLPSYKESISYNADYVRK NYLEKGADHFNGYTLPAMNIKYATDKEWAGKIANLMERIKPFNKKDYENVKRLPKNPNTLNVEALGKEIPYKDYVKDATA TVQLVGSYYQVPYPFGYTIKSVPNITQNEVGKLESGKKVNVYREDPNGWVEFSFENAQEKYWTLKSNLKI
Sequences:
>Translated_470_residues MKKVISNVLAVTVALQVVMAPATSFAAEKEFPDVPKNHWSFEAITDLTSKGVIAGYDNGKFGFGDVVTREQVAALMYRAL KPEAKSDYKNPYSDISAGTTMFPKEILALTDMGIFVGDDKGTFRPKESLTRAEMSVILQRAFQLEVKAPHTFNDIDASHW WAKEAISALQSNGVSIGNGLGGFDPSGVLTRESYAQLLYRAMQIKKDVPVEQPSYINLDVTLPSNVTAQEIDNFIKKSHA DSPLIGTGQDFIQAQNEYGVSALYLAAHAILESAYGKSEIAYRKHNLFGLRAYDRDPFAYAKYLPSYKESISYNADYVRK NYLEKGADHFNGYTLPAMNIKYATDKEWAGKIANLMERIKPFNKKDYENVKRLPKNPNTLNVEALGKEIPYKDYVKDATA TVQLVGSYYQVPYPFGYTIKSVPNITQNEVGKLESGKKVNVYREDPNGWVEFSFENAQEKYWTLKSNLKI >Mature_470_residues MKKVISNVLAVTVALQVVMAPATSFAAEKEFPDVPKNHWSFEAITDLTSKGVIAGYDNGKFGFGDVVTREQVAALMYRAL KPEAKSDYKNPYSDISAGTTMFPKEILALTDMGIFVGDDKGTFRPKESLTRAEMSVILQRAFQLEVKAPHTFNDIDASHW WAKEAISALQSNGVSIGNGLGGFDPSGVLTRESYAQLLYRAMQIKKDVPVEQPSYINLDVTLPSNVTAQEIDNFIKKSHA DSPLIGTGQDFIQAQNEYGVSALYLAAHAILESAYGKSEIAYRKHNLFGLRAYDRDPFAYAKYLPSYKESISYNADYVRK NYLEKGADHFNGYTLPAMNIKYATDKEWAGKIANLMERIKPFNKKDYENVKRLPKNPNTLNVEALGKEIPYKDYVKDATA TVQLVGSYYQVPYPFGYTIKSVPNITQNEVGKLESGKKVNVYREDPNGWVEFSFENAQEKYWTLKSNLKI
Specific function: Plays an important role in cell wall degradation and cell separation [H]
COG id: COG4193
COG function: function code G; Beta- N-acetylglucosaminidase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 13 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 52686; Mature: 52686
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVISNVLAVTVALQVVMAPATSFAAEKEFPDVPKNHWSFEAITDLTSKGVIAGYDNGK CHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC FGFGDVVTREQVAALMYRALKPEAKSDYKNPYSDISAGTTMFPKEILALTDMGIFVGDDK CCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCHHHHHHHHHCCEEEECCC GTFRPKESLTRAEMSVILQRAFQLEVKAPHTFNDIDASHWWAKEAISALQSNGVSIGNGL CCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCC GGFDPSGVLTRESYAQLLYRAMQIKKDVPVEQPSYINLDVTLPSNVTAQEIDNFIKKSHA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC DSPLIGTGQDFIQAQNEYGVSALYLAAHAILESAYGKSEIAYRKHNLFGLRAYDRDPFAY CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCHHH AKYLPSYKESISYNADYVRKNYLEKGADHFNGYTLPAMNIKYATDKEWAGKIANLMERIK HHHCCCHHHHCCCCHHHHHHHHHHHCHHHCCCEECCCCEEEECCCHHHHHHHHHHHHHHC PFNKKDYENVKRLPKNPNTLNVEALGKEIPYKDYVKDATATVQLVGSYYQVPYPFGYTIK CCCCCCHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH SVPNITQNEVGKLESGKKVNVYREDPNGWVEFSFENAQEKYWTLKSNLKI CCCCCCHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCHHHEEHHCCCCC >Mature Secondary Structure MKKVISNVLAVTVALQVVMAPATSFAAEKEFPDVPKNHWSFEAITDLTSKGVIAGYDNGK CHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC FGFGDVVTREQVAALMYRALKPEAKSDYKNPYSDISAGTTMFPKEILALTDMGIFVGDDK CCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCCCCCCHHHHHHHHHCCEEEECCC GTFRPKESLTRAEMSVILQRAFQLEVKAPHTFNDIDASHWWAKEAISALQSNGVSIGNGL CCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCC GGFDPSGVLTRESYAQLLYRAMQIKKDVPVEQPSYINLDVTLPSNVTAQEIDNFIKKSHA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCC DSPLIGTGQDFIQAQNEYGVSALYLAAHAILESAYGKSEIAYRKHNLFGLRAYDRDPFAY CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCHHH AKYLPSYKESISYNADYVRKNYLEKGADHFNGYTLPAMNIKYATDKEWAGKIANLMERIK HHHCCCHHHHCCCCHHHHHHHHHHHCHHHCCCEECCCCEEEECCCHHHHHHHHHHHHHHC PFNKKDYENVKRLPKNPNTLNVEALGKEIPYKDYVKDATATVQLVGSYYQVPYPFGYTIK CCCCCCHHHHHHCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH SVPNITQNEVGKLESGKKVNVYREDPNGWVEFSFENAQEKYWTLKSNLKI CCCCCCHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCHHHEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]