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The map label for this gene is ccdA [H]

Identifier: 118477252

GI number: 118477252

Start: 1704390

End: 1705103

Strand: Direct

Name: ccdA [H]

Synonym: BALH_1562

Alternate gene names: 118477252

Gene position: 1704390-1705103 (Clockwise)

Preceding gene: 118477251

Following gene: 118477253

Centisome position: 32.42

GC content: 36.13

Gene sequence:

>714_bases
ATGAATGCAGCAGATTTAACAATTTGGCTTGTAGCAGGGGCAGGAGTATTGTCATTTATATCACCATGCTCTTTACCGCT
ATATCCATCTTATTTATCTTATATTACAGGTGTGTCTATTCAAGATTTAAAAGAAAATCGTGGGATTATGCAAAAATCAG
CGATTATACATACCGTATTTTTTATAATCGGATTTTCGGTTATATTTTACGCGTTAGGTTTATCAGTAAGCTGGATTGGA
ATCACATTTTCATCTAACCAAAAATTAATTCAACAAATTGGTGGGATTTTTATTGTTTTAATGGGGCTATTTATGACGGG
CTTGTTTCAGCCTAAGTGGCTTATGGCAGAGAAAAAGGTGCAGTATAGAAGTAAATCGACTGGATATATTCGCTCGATTT
TAGTCGGTATGACATATGCAGCGGGTTGGACTCCATGTGTTGGACCGATATTTTCAGCTGTACTCATGCTTGGTGCGACG
AATCCTGAAGGGGCACTTCTTTATATTACAGCGTATACGCTTGGATTTGCAGTTCCATTTTTCGTGATGGCATTCTTTAT
TGGGAAGATAAAATGGATTGTTACATATGCCAATGTCATGATGAAAATTGGCGGTGGAATGATGATTGTAACAGGTATTT
TATTGTATACAAATCAAATGACGAAAATTACAGCATTCTTTATTCGTCTATTCGGCGGATTTACAGGTTTTTAA

Upstream 100 bases:

>100_bases
GTTTATTTTGTATGTCGGTTGTGCTAATTGTCGGAGAGTGCATATAGCCTCTTTTTTTAAGAATTAACACTACCTATTGT
AGTGTTTTAGGGGGAATAAA

Downstream 100 bases:

>100_bases
AAATGAGGAGGAAAAAAAGTGAAGAAACTAATTGCTATTATACTGGCCGGAGCATTAATTTGGGCCGGAGTTAATTTTTA
TAATTCAAAGAAAGAAGAAA

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFIIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Sequences:

>Translated_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFIIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
>Mature_237_residues
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVFFIIGFSVIFYALGLSVSWIG
ITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKVQYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGAT
NPEGALLYITAYTLGFAVPFFVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26037; Mature: 26037

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FIIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAADLTIWLVAGAGVLSFISPCSLPLYPSYLSYITGVSIQDLKENRGIMQKSAIIHTVF
CCCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
FIIGFSVIFYALGLSVSWIGITFSSNQKLIQQIGGIFIVLMGLFMTGLFQPKWLMAEKKV
HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QYRSKSTGYIRSILVGMTYAAGWTPCVGPIFSAVLMLGATNPEGALLYITAYTLGFAVPF
HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHH
FVMAFFIGKIKWIVTYANVMMKIGGGMMIVTGILLYTNQMTKITAFFIRLFGGFTGF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]