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The map label for this gene is hfq [C]

Identifier: 118477161

GI number: 118477161

Start: 1615291

End: 1615485

Strand: Direct

Name: hfq [C]

Synonym: BALH_1466

Alternate gene names: 118477161

Gene position: 1615291-1615485 (Clockwise)

Preceding gene: 118477160

Following gene: 118477163

Centisome position: 30.73

GC content: 27.69

Gene sequence:

>195_bases
ATGTATTTGGAACATTTACAAGACGAGCTATATAAACAAATAAAAGAAGAAAAAGGTATTGTTACAATTTTTTTAAAGAG
TGGCGTTAGAATAGTAGGAGAAATTGTTGCAATAGACAAATTTACCGTTTTAATGTTAGTTGATGGAAAACAACAACTTA
TTTACAAGCAGGCTGTATCAACAATAATGAAATAA

Upstream 100 bases:

>100_bases
AGATATACTTATTAATAAGTTTATGAATGTAAAAGATAAAGTACATAAATAAAGAATTTGTAGTTTTTTATATTAAGATA
TTTAATGAAAAAGGAGAGAG

Downstream 100 bases:

>100_bases
GACACTCGTGCTGAGTGTCTTATTTCATTATTGCTTGCAAGCTTCAACGTCAATGCCAGCAGCTAATAATTTATTTTCAC
CATCTTGCTCAATGATTTTT

Product: host factor protein

Products: NA

Alternate protein names: Host Factor-I Protein; Hfq Protein

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MYLEHLQDELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK

Sequences:

>Translated_64_residues
MYLEHLQDELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK
>Mature_64_residues
MYLEHLQDELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVSTIMK

Specific function: RNA-Binding Protein That Stimulates The Elongation Of Poly(A) Tails. Required For Phage Qbeta RNA Genome Replication; Function By Destabilizing An RNA Secondary Structure On The 3'End Of The Qbeta Phage. Binds Tightly To Qbeta RNA, Poly(A) RNA, Oxys RNA A

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7385; Mature: 7385

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLEHLQDELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVS
CCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHH
TIMK
HHCC
>Mature Secondary Structure
MYLEHLQDELYKQIKEEKGIVTIFLKSGVRIVGEIVAIDKFTVLMLVDGKQQLIYKQAVS
CCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHH
TIMK
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA