Click here to switch to the map view.

The map label for this gene is ycgF [H]

Identifier: 118477140

GI number: 118477140

Start: 1595019

End: 1595723

Strand: Direct

Name: ycgF [H]

Synonym: BALH_1444

Alternate gene names: 118477140

Gene position: 1595019-1595723 (Clockwise)

Preceding gene: 118477139

Following gene: 118477141

Centisome position: 30.34

GC content: 33.48

Gene sequence:

>705_bases
TTGATGAAAGCTAGTCTATTTTCAACCATTACATCATTACTTAATAGTAAAGGAAGTAGAAAGGATAGAGCGATGTTTGG
AGCGATTATACAACAAATTGTATTAGGAATTTCATTAGCGGCGCCGGTAGGTCCGATTAATATTGAAATGTTAAAACGAG
GAATTGAACGAGGTTTTTGGCATGCCTGGATTGTTGGAATTGGTGGTATGACTGCAGATATTTTGTTTATGCTTCTCATC
TACTTCGGTTTATCTTCTCTGTTTATGTATACATATGTACAAGCTTTTATGTATTGCACAGGGTTTTTCTTATTATTTTA
TTTAGGATTTCAAAGTGTAAAACAAGGAATTTCTCACTCGAATATGGAATATAAAAAGGAAGAGGTAGGCGGCCTTAAAC
AATCGTTTATGGCAGGTTTTTTCATTGCAATATCCAATCCATTAAATCTTGTTTTTTGGTTTGGTATATACGGTAGTACA
CTTAGCTCATTGCTTACGAAGGTAACGAAACAAGAAGCCTTTTTGTACAGTCTTTGTATTATCGTTGGTATTATTTTATG
GAATTTAAATATTGCTTTTTCTGTCCATTTTGGCAGAACTTTATTAAAGCAAAAAGCACTTGGCTATATAACAGCCGGAG
CAGGTATTATTCTAGTAGGATATTCTATCCATTTTGCATACAAAGCTTTACAGTTGTTCACATAA

Upstream 100 bases:

>100_bases
AAAATGTCCTTTTCTTCATAAGATAGAAAAGTAAGAGCCATCACCTAAATGGCTCTTTTGCATATTTTGGATAAAAAAGG
GTATTTTAGTAGTACATATT

Downstream 100 bases:

>100_bases
GATTGAAGGGGAGATTTTTATGTATCGAACCACTATTGACGGAAAAGAAATCATTATTACGTTAGCACCAAAAATCAGAA
AAGAAATTACTGATAGAAAC

Product: amino acid transporter LysE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MMKASLFSTITSLLNSKGSRKDRAMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWIVGIGGMTADILFMLLI
YFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISHSNMEYKKEEVGGLKQSFMAGFFIAISNPLNLVFWFGIYGST
LSSLLTKVTKQEAFLYSLCIIVGIILWNLNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT

Sequences:

>Translated_234_residues
MMKASLFSTITSLLNSKGSRKDRAMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWIVGIGGMTADILFMLLI
YFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISHSNMEYKKEEVGGLKQSFMAGFFIAISNPLNLVFWFGIYGST
LSSLLTKVTKQEAFLYSLCIIVGIILWNLNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
>Mature_234_residues
MMKASLFSTITSLLNSKGSRKDRAMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWIVGIGGMTADILFMLLI
YFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISHSNMEYKKEEVGGLKQSFMAGFFIAISNPLNLVFWFGIYGST
LSSLLTKVTKQEAFLYSLCIIVGIILWNLNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 26069; Mature: 26069

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKASLFSTITSLLNSKGSRKDRAMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFW
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAWIVGIGGMTADILFMLLIYFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISHS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NMEYKKEEVGGLKQSFMAGFFIAISNPLNLVFWFGIYGSTLSSLLTKVTKQEAFLYSLCI
CCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGIILWNLNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
HHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKASLFSTITSLLNSKGSRKDRAMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFW
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HAWIVGIGGMTADILFMLLIYFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISHS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NMEYKKEEVGGLKQSFMAGFFIAISNPLNLVFWFGIYGSTLSSLLTKVTKQEAFLYSLCI
CCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGIILWNLNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
HHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]