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The map label for this gene is ydeE [H]

Identifier: 118476707

GI number: 118476707

Start: 1132906

End: 1133808

Strand: Direct

Name: ydeE [H]

Synonym: BALH_0986

Alternate gene names: 118476707

Gene position: 1132906-1133808 (Clockwise)

Preceding gene: 118476705

Following gene: 118476710

Centisome position: 21.55

GC content: 38.32

Gene sequence:

>903_bases
ATGGAAAGCTATGAAACACAAATTCAAAGGTCCATTGATTATATTGAGGAAGATGTAATGGAAAAACAGACACTGCGTAA
TTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGGCGTTAGTAGGTGATACGGTAATGGAGT
ATGTTCGGAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATCGCATTTGAA
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAGCA
AGAAATAGAAACACCGATGTATTCCAGCGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAATGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAGAACCAT
CAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACGACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATCGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACGTTCCCAGCAGCAACATATGCAGTATTTACAACGCCGAAAGTT
CCTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAGGATACGA
ACATTGCGGCGTTAATGAGTTTGAGCTATACGATGAGCGTTCCCATGCAGATAAAAGTGAGTTCGCTCAAATTGAACTTT
GGATACCGGTGAAGAAGAAATAA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACAATTTTTTATGGAATTATAGTAAAAAACGTCAAGAATTGGATAAGATTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
TAGAAAGAAAAGCGAGCCACTGAGTGGTTCGCTTTTATCATAGAGGTTGCGGTATATGCCGATTTTTGTCGGTAAGTCGA
TATATCTAGAAAATCGCTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYSSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Sequences:

>Translated_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYSSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
>Mature_300_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYSSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=113, Percent_Identity=36.283185840708, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=35.9223300970874, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35231; Mature: 35231

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYSSVNVK
HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHHCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYSSVNVK
HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEECCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTTPKV
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHHCCCHHEEEEECCCC
PHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVNEFELYDERSHADKSEFAQIELWIPVKKK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]