Click here to switch to the map view.

The map label for this gene is czcR

Identifier: 118475969

GI number: 118475969

Start: 212611

End: 213507

Strand: Reverse

Name: czcR

Synonym: BALH_0205

Alternate gene names: 118475969

Gene position: 213507-212611 (Counterclockwise)

Preceding gene: 118475977

Following gene: 118475967

Centisome position: 4.06

GC content: 35.67

Gene sequence:

>897_bases
ATGATAGTTAACATCAAGGAGGACAGTATTATGGAATTAAGAGACTTGCAAATCTTCCAGAGCGTTGCCGACCAAGGTAG
TGTAAGTAGCGCAGCAAAGGAATTAAATTACGTACAATCAAATGTAACTGCACGTATTAAACAACTAGAAAACGAGCTAA
AAACACCGCTCTTTTATCGTCATAAGCGAGGCATGACTTTAACAGCTGAAGGAAGAAAAATGCTCGTTTATGTTCATAAA
ATTTTGCAAGATGTTGACGAGCTAAAACAAGTATTTTTAGATAGCGAAACACCCTCTGGCATATTAAAAATCGGTACTGT
CGAAACAGTAAGTACATTACCTACCATTTTATCTTCTTACTATAAAAGCTATCCGAACGTCGATTTGTCATTACAAGCAG
GTTTAACAGAAGAATTAATTAGAGAAGTACTCGATCATCAATTAGATGGCGCTTTTATATCAGGACCAATAAAACATCCA
CTTATTGAACAATACGATGTTAGTACAGAAAAATTAATGCTTGTAACACAAAATAAAGCTTTTCATATTGAAGAATTTAC
AACAACGCCTCTACTCGTTTTTAATCAAGGATGTGGATACCGTTCCAAACTAGAACGATGGCTGAAAGATGAAGGTTTGC
TTCCAAAAAGAATTATGGAATTCAATATATTAGAGACCATATTAAACAGTGTTGCACTCGGCCTTGGAATTACACTCGTA
CCACAGTCTGCTGTCCATCATCTTTCTAAAGCAGGTAAAGTTCATTGCCATGCAATTCCTGAGAAATATGGTAGTATTTC
AACGGTTTTCATACGCCGCAAAGATAGCTATATGACGAATTCAATGCGTAGCTTTTTAAAAACAATCGAAGAGCACCACC
ACATTAATATGCTTTAA

Upstream 100 bases:

>100_bases
CACCACAATCCCCCGCTTCTTTCTATTTGCACAAAGAGAATTGTAAAAGAAAAAATATATCACGTAAAATGATTCAAAAT
GATATTAACTATCATTTATA

Downstream 100 bases:

>100_bases
AAGACATTCTTACACGAATGTCTTTTTTTCTTACAAAAGTGTAAGTCTTCCGTAAGCTAATTCGATAGTTGCAGGCGATC
ATATTTCCTATAATTAAGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MIVNIKEDSIMELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVHK
ILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHP
LIEQYDVSTEKLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLV
PQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML

Sequences:

>Translated_298_residues
MIVNIKEDSIMELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVHK
ILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHP
LIEQYDVSTEKLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLV
PQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
>Mature_298_residues
MIVNIKEDSIMELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYRHKRGMTLTAEGRKMLVYVHK
ILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSYYKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHP
LIEQYDVSTEKLMLVTQNKAFHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLV
PQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787806, Length=285, Percent_Identity=30.1754385964912, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=26.056338028169, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=24.8275862068966, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=26.3157894736842, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787530, Length=297, Percent_Identity=24.5791245791246, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=26.510067114094, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790208, Length=246, Percent_Identity=26.0162601626016, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.9076305220884, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=25.7028112449799, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=24.390243902439, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=25, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=25.7936507936508, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=25.609756097561, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=160, Percent_Identity=30.625, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=137, Percent_Identity=29.1970802919708, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788748, Length=250, Percent_Identity=22, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): CZCR_BACAH (A0R8S0)

Other databases:

- EMBL:   CP000485
- RefSeq:   YP_893120.1
- ProteinModelPortal:   A0R8S0
- SMR:   A0R8S0
- EnsemblBacteria:   EBBACT00000071201
- GeneID:   4544631
- GenomeReviews:   CP000485_GR
- KEGG:   btl:BALH_0205
- NMPDR:   fig|412694.5.peg.254
- eggNOG:   COG0583
- GeneTree:   EBGT00070000031761
- HOGENOM:   HBG685425
- OMA:   LIKSEFC
- ProtClustDB:   CLSK887634
- BioCyc:   BTHU412694:BALH_0205-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 33842; Mature: 33842

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVNIKEDSIMELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYR
CEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
HKRGMTLTAEGRKMLVYVHKILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSY
HCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
YKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKA
HHHCCCCCEEECCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCCEEEEEECCCE
FHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLV
EEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
PQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
CHHHHHHHHHCCCEEEEECHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIVNIKEDSIMELRDLQIFQSVADQGSVSSAAKELNYVQSNVTARIKQLENELKTPLFYR
CEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
HKRGMTLTAEGRKMLVYVHKILQDVDELKQVFLDSETPSGILKIGTVETVSTLPTILSSY
HCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
YKSYPNVDLSLQAGLTEELIREVLDHQLDGAFISGPIKHPLIEQYDVSTEKLMLVTQNKA
HHHCCCCCEEECCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCCEEEEEECCCE
FHIEEFTTTPLLVFNQGCGYRSKLERWLKDEGLLPKRIMEFNILETILNSVALGLGITLV
EEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
PQSAVHHLSKAGKVHCHAIPEKYGSISTVFIRRKDSYMTNSMRSFLKTIEEHHHINML
CHHHHHHHHHCCCEEEEECHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA