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The map label for this gene is ygfA [H]

Identifier: 117921943

GI number: 117921943

Start: 4207158

End: 4207835

Strand: Direct

Name: ygfA [H]

Synonym: Shewana3_3506

Alternate gene names: 117921943

Gene position: 4207158-4207835 (Clockwise)

Preceding gene: 117921942

Following gene: 117921945

Centisome position: 84.61

GC content: 53.39

Gene sequence:

>678_bases
ATGTCTATCACTTCACCTGTCTCGAACACTTCGGCCCCAACAATCAAGGGGCCACACGGCACTCAGTCTGAAATCGATAC
CACCACTCTCAACCCAAATCTAAGCCGCGCCGAATTACGCAAACAGATCCGCTTGGCTCGCCGCTCGCTTTCGACAGAGG
TGCAAACTGAGGCTAGCCTTGCCGCCAGCCAGCGAATGCTCGAAAAACTGAGCGCACTGAATGCCCAGCATGTCGCACTT
TACCTCACCCACGATGGTGAACTCGCAACCGCTACGCTTATCGAAGCACTTTGGCAGCAGGGCATTCACACCTATCTGCC
ACGGCTCCACCCCTTTAATGCTGGGCAATTATTGTTTTTGCATTACCACGCCGACTCGCCAATGCAGCCGAATCAATTTG
GCATTTTAGAGCCTAAGTTGGATGTGCGCGCCGTGATGCCAATTGAGCGACTGGATGTGGTGATCACCCCGCTGGTTGCC
TTTGATATCAAAGGCAATCGTATGGGAATGGGCGGCGGCTATTACGACAGAACATTAGCCAATTGGCATAGCAAAGGTAA
ACCTCTGCCTATGGGTTACGCCCATGATTGCCAGCAAGTACCGAGCCTGCCCTGCGAGCATTGGGATGTGCCCTTACCTA
CTATCATCACTCCAAGCCGCGAATGGCGGTTCGACTAG

Upstream 100 bases:

>100_bases
CGGCTCGTACCGAGAAGCCTTAGGAGGTAATCATTTACCCGCCTTGAACCTACGGTTCAAGGGCTACACCGGTAGCGGCA
TTCTGGGGAGCATCTTATTT

Downstream 100 bases:

>100_bases
GCCATTTAGTCGAATCAGCCGAGTCATTCGACTTAGCCAAGTTACAGGTTTAAACCTTGCTTCTCGTTTAAACCCAGTAC
TCGTTTAAATCCTGCACTCG

Product: 5-formyltetrahydrofolate cyclo-ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSITSPVSNTSAPTIKGPHGTQSEIDTTTLNPNLSRAELRKQIRLARRSLSTEVQTEASLAASQRMLEKLSALNAQHVAL
YLTHDGELATATLIEALWQQGIHTYLPRLHPFNAGQLLFLHYHADSPMQPNQFGILEPKLDVRAVMPIERLDVVITPLVA
FDIKGNRMGMGGGYYDRTLANWHSKGKPLPMGYAHDCQQVPSLPCEHWDVPLPTIITPSREWRFD

Sequences:

>Translated_225_residues
MSITSPVSNTSAPTIKGPHGTQSEIDTTTLNPNLSRAELRKQIRLARRSLSTEVQTEASLAASQRMLEKLSALNAQHVAL
YLTHDGELATATLIEALWQQGIHTYLPRLHPFNAGQLLFLHYHADSPMQPNQFGILEPKLDVRAVMPIERLDVVITPLVA
FDIKGNRMGMGGGYYDRTLANWHSKGKPLPMGYAHDCQQVPSLPCEHWDVPLPTIITPSREWRFD
>Mature_224_residues
SITSPVSNTSAPTIKGPHGTQSEIDTTTLNPNLSRAELRKQIRLARRSLSTEVQTEASLAASQRMLEKLSALNAQHVALY
LTHDGELATATLIEALWQQGIHTYLPRLHPFNAGQLLFLHYHADSPMQPNQFGILEPKLDVRAVMPIERLDVVITPLVAF
DIKGNRMGMGGGYYDRTLANWHSKGKPLPMGYAHDCQQVPSLPCEHWDVPLPTIITPSREWRFD

Specific function: Unknown

COG id: COG0212

COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5-formyltetrahydrofolate cyclo-ligase family [H]

Homologues:

Organism=Escherichia coli, GI1789278, Length=183, Percent_Identity=55.7377049180328, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002698 [H]

Pfam domain/function: PF01812 5-FTHF_cyc-lig [H]

EC number: NA

Molecular weight: Translated: 25122; Mature: 24991

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITSPVSNTSAPTIKGPHGTQSEIDTTTLNPNLSRAELRKQIRLARRSLSTEVQTEASL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AASQRMLEKLSALNAQHVALYLTHDGELATATLIEALWQQGIHTYLPRLHPFNAGQLLFL
HHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
HYHADSPMQPNQFGILEPKLDVRAVMPIERLDVVITPLVAFDIKGNRMGMGGGYYDRTLA
EEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHEECEEEEEECCCEECCCCCHHHHHHH
NWHSKGKPLPMGYAHDCQQVPSLPCEHWDVPLPTIITPSREWRFD
HHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
SITSPVSNTSAPTIKGPHGTQSEIDTTTLNPNLSRAELRKQIRLARRSLSTEVQTEASL
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AASQRMLEKLSALNAQHVALYLTHDGELATATLIEALWQQGIHTYLPRLHPFNAGQLLFL
HHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
HYHADSPMQPNQFGILEPKLDVRAVMPIERLDVVITPLVAFDIKGNRMGMGGGYYDRTLA
EEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHEECEEEEEECCCEECCCCCHHHHHHH
NWHSKGKPLPMGYAHDCQQVPSLPCEHWDVPLPTIITPSREWRFD
HHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]