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The map label for this gene is nqrD [H]

Identifier: 117921812

GI number: 117921812

Start: 4045867

End: 4046487

Strand: Reverse

Name: nqrD [H]

Synonym: Shewana3_3375

Alternate gene names: 117921812

Gene position: 4046487-4045867 (Counterclockwise)

Preceding gene: 117921813

Following gene: 117921811

Centisome position: 81.38

GC content: 51.37

Gene sequence:

>621_bases
ATGAGCAACAGTTTATCCATGCGGGACATGCTAGCAGGCCCTGTATTTGCCAATAACCCAGTGGCGATGCAAGTGCTGGG
CGTATGTTCGGCGCTGGCGGTGAGTAACTCCATGCAGACGGCCGTGGTGATGACACTGGCGGTGACCTTCGTACTGGTGT
TCTCTAACCTTATTATCTCTGCCATTCGCAACTTTATCCCTAACAGTGTGCGGATTATTGCCCAGATGACGGTCATTGCC
TCCTTGGTGATTATCGTCGACATGGTGTTGCAGGATGTGGCTTACGAGCTATCTAAGCAACTATCTGTATTCGTTGGGTT
AATCATCACTAACTGTATCATCATGGGCCGCGCAGAAGCCTTTGCGATGAAGTATCCACCTCACTTAGCCGTGGTCGATG
CCGTGGGTAATGCGGCGGGTTATGGCCTAGTGCTGATCAGTGTGGCCTTTGTGCGTGAGCTGTTAGGCACGGGCAATCTG
TTTGGTCATAGCGTGTTGACTACGGTTGAAAACGGCGGCTGGTACTTACCCAATGAGATGTTTAAGTTGCCCCCAAGCGC
CTTCTTCCTGATTGGCCTGCTGATCTGGACCATTAACGTGATCCAGCGTAAACGGGGTTAA

Upstream 100 bases:

>100_bases
TGCAGCGCGCAATGGAGTTTTGGTTTGGCGTCGAGGGTTTCCAAACCTTCTTCAACCAATTAAAAGCATCGGCTGATCAA
GGTGAGTTGGGAGGTGCAAA

Downstream 100 bases:

>100_bases
GGAGCGAATATGGAACACTATATTAATCTGTTTTTACAGGCCACATTCTTAGATAACATGGCGCTGTCGTTCTTCCTCGG
TATGTGTACCTTCTTAGCCG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSNSLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIPNSVRIIAQMTVIA
SLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNL
FGHSVLTTVENGGWYLPNEMFKLPPSAFFLIGLLIWTINVIQRKRG

Sequences:

>Translated_206_residues
MSNSLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIPNSVRIIAQMTVIA
SLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNL
FGHSVLTTVENGGWYLPNEMFKLPPSAFFLIGLLIWTINVIQRKRG
>Mature_205_residues
SNSLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIPNSVRIIAQMTVIAS
LVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLF
GHSVLTTVENGGWYLPNEMFKLPPSAFFLIGLLIWTINVIQRKRG

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=34.5971563981043, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22193; Mature: 22062

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIIS
CCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIRNFIPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGWYLPNEM
HEECCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCHH
FKLPPSAFFLIGLLIWTINVIQRKRG
HHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNSLSMRDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIIS
CCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIRNFIPNSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKYPPHLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGWYLPNEM
HEECCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCHH
FKLPPSAFFLIGLLIWTINVIQRKRG
HHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA