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The map label for this gene is yjcC [H]

Identifier: 117921795

GI number: 117921795

Start: 4027170

End: 4029002

Strand: Reverse

Name: yjcC [H]

Synonym: Shewana3_3357

Alternate gene names: 117921795

Gene position: 4029002-4027170 (Counterclockwise)

Preceding gene: 117921796

Following gene: 117921794

Centisome position: 81.03

GC content: 44.24

Gene sequence:

>1833_bases
GTGCAACTTTCAAAGATTTTTCCATTACTTGCACTGATTTCTTTGTCTTTTCACTTTGCTAAATATCTGCAGCTGTCGGC
GATTGTGGTGTGTTCTTTGTCGCTCAGTATTTTACTCGCCATTAATGCCCAAGATACGGGGAATGTATTTAATCTCGATT
ATGTACGCGCCATTTTGGCGGATCCGCGAATTGCGGTTTTGCCAATTATCTCTGCCTATTTATTACGTTTTTTGAGTGCA
TGGAAGGGGCTGCAACTGATTAAAGCGAAGGCGCTTAGTCGTTACTTAAAGCAACATTTAAATTTATTTTTCCCGATAGT
GATTGGTTTTATTGGTCTGTTTGCCGTCGTTGCCGAAGCTTCTATCTTTTTAGAATGGTTATTTGCGCCATTTATCGAAG
GGTTGCAACAAGCGAGCCTGGGCGTGCAACTGTTTATGCGGATCCTGCTTACCCATGTGCTCTGGTGTTTTGGAGTGCAT
GGCGATAACGCCTATCTACTGCTAATTGGTGTCGATAATGGTTTAATGCAACTGGTACCGCATTTAACGGCGAGCCAGTT
TATGGACTTGTTTATTCTCTACGGCGGTAGCGGTGCCACGTTATCGCTGATCATTGCCATTTTTATTGGCGCTAAAGACA
GTGCTACTCGGCATATTGCTAAAATTGCCACACCCTTTGCGATTTTTAACATCAACGAAATTCTGATTTACGGCCTACCG
ATTATCTTTAATCCGCGTTTATTAGTGCCGTTTATCCTATCCCCACTGGTTAATTTTATCTTGGCCTACAGTGCTATCCA
TGTTGGGCTCTTAAGCTTTGAGGGGCACAGCTTTCCTTGGATCACGCCGCCACTGCTCAATGCTTATATTGCCAGTGGTC
ACATGAGTGCGGTGTTTTTCCAGGTGTTATTGATAGGGCTTGGGGTATTGATTTATCTGCCCTTTGTTCGACGTTTCTCC
TTGATGTCAGAGCACTATGAGTTTGATAGTGAATTAATCAAACGTGTGCAGTTTCAAGCGGATATCGACCGCATGACGGA
GCAGCATTATTCACAGCAGCAGTCCGAATCACTTAAGGCTGAATTGAACCTCGAGAAGACCATCAAAGAAGTCTTGGCGG
GGGAGTTACAACTACACTATCAACCTAAAATTGCCTTAAGTACTAATCATGTTGTTGGATATGAAGCGCTTATTCGCCTG
AAGGATGAACATGGTAAGTTAAAAGGGCCGTATTTTATTGATGCCTTTCAGCGTGCGGGCTATTCCCATATCATCGACCG
CTTTGTGATTAATACGGTTGCAGAGGATCTCGCTCGCTGGGAATTAGAAGGTTTTTACCCAAAAGTGAGCATCAATATCG
ACCCAAACAATATTACCGATCCCCAATTGTTGGCGACCATGAATGAAAGGTTAGGCAGCGTCGCCAACCGAGTCGAGATT
GAGATGTTAGAATCGGCCTTTATGTTGGATTTAAATCGTATCGATAACAGCATGAAGCAGCTTAAACAACATGGGTTTAG
CTTCTTTTTAGATGACTTCGGGACTGGGTTTTCTAGCTTAAGTTTACTGAGTCGGATCAATGTGGATGGCATTAAGCTCG
ACCGCAGTATTCTGGCTAATACCTGTGAGCCCAAAGGGCGTACCTTGTATCTGCAGATCTGTAAGCTTTGTAATAGTTTA
GGCTTTAGTTTGATTGCCGAAGGAGTTGAGACCCCTGAAGAAGCCGAGTTTGTTAACGCGGCGGGGGTGAGTTATGTGCA
GGGCTGGTTATACGCCAAGGCGATGCCAGGACCCGAGGCTAAAGCCTTTTGGTTGGAGAGAAATAGTGAGTGA

Upstream 100 bases:

>100_bases
TTTTGATTAATTCGTTTCTCTCGCTGATTATTGCCTTACTCGACATTGGCATGCCGACTTGGCAAGGCTCTGCATTTCAT
CAGGGAATTAGTTTTTTTCG

Downstream 100 bases:

>100_bases
TACCTTGGCCAGTAATCTGCTGACGACATACGCCAATGCCAATTTGTCGGCTTGGGATAATTTGCGAGTCTTGCTATCCG
AGAGTGCGTTGCAGCAATGC

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MQLSKIFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILADPRIAVLPIISAYLLRFLSA
WKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFAVVAEASIFLEWLFAPFIEGLQQASLGVQLFMRILLTHVLWCFGVH
GDNAYLLLIGVDNGLMQLVPHLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIFNINEILIYGLP
IIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAYIASGHMSAVFFQVLLIGLGVLIYLPFVRRFS
LMSEHYEFDSELIKRVQFQADIDRMTEQHYSQQQSESLKAELNLEKTIKEVLAGELQLHYQPKIALSTNHVVGYEALIRL
KDEHGKLKGPYFIDAFQRAGYSHIIDRFVINTVAEDLARWELEGFYPKVSINIDPNNITDPQLLATMNERLGSVANRVEI
EMLESAFMLDLNRIDNSMKQLKQHGFSFFLDDFGTGFSSLSLLSRINVDGIKLDRSILANTCEPKGRTLYLQICKLCNSL
GFSLIAEGVETPEEAEFVNAAGVSYVQGWLYAKAMPGPEAKAFWLERNSE

Sequences:

>Translated_610_residues
MQLSKIFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILADPRIAVLPIISAYLLRFLSA
WKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFAVVAEASIFLEWLFAPFIEGLQQASLGVQLFMRILLTHVLWCFGVH
GDNAYLLLIGVDNGLMQLVPHLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIFNINEILIYGLP
IIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAYIASGHMSAVFFQVLLIGLGVLIYLPFVRRFS
LMSEHYEFDSELIKRVQFQADIDRMTEQHYSQQQSESLKAELNLEKTIKEVLAGELQLHYQPKIALSTNHVVGYEALIRL
KDEHGKLKGPYFIDAFQRAGYSHIIDRFVINTVAEDLARWELEGFYPKVSINIDPNNITDPQLLATMNERLGSVANRVEI
EMLESAFMLDLNRIDNSMKQLKQHGFSFFLDDFGTGFSSLSLLSRINVDGIKLDRSILANTCEPKGRTLYLQICKLCNSL
GFSLIAEGVETPEEAEFVNAAGVSYVQGWLYAKAMPGPEAKAFWLERNSE
>Mature_610_residues
MQLSKIFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILADPRIAVLPIISAYLLRFLSA
WKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFAVVAEASIFLEWLFAPFIEGLQQASLGVQLFMRILLTHVLWCFGVH
GDNAYLLLIGVDNGLMQLVPHLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIFNINEILIYGLP
IIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAYIASGHMSAVFFQVLLIGLGVLIYLPFVRRFS
LMSEHYEFDSELIKRVQFQADIDRMTEQHYSQQQSESLKAELNLEKTIKEVLAGELQLHYQPKIALSTNHVVGYEALIRL
KDEHGKLKGPYFIDAFQRAGYSHIIDRFVINTVAEDLARWELEGFYPKVSINIDPNNITDPQLLATMNERLGSVANRVEI
EMLESAFMLDLNRIDNSMKQLKQHGFSFFLDDFGTGFSSLSLLSRINVDGIKLDRSILANTCEPKGRTLYLQICKLCNSL
GFSLIAEGVETPEEAEFVNAAGVSYVQGWLYAKAMPGPEAKAFWLERNSE

Specific function: Overexpression reduces biofilm formation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=34.8739495798319, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI87081743, Length=226, Percent_Identity=33.6283185840708, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1787541, Length=264, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081921, Length=260, Percent_Identity=31.1538461538462, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788032, Length=206, Percent_Identity=35.4368932038835, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI226510982, Length=259, Percent_Identity=26.6409266409266, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=29.9595141700405, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=29.7071129707113, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788849, Length=213, Percent_Identity=27.2300469483568, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081980, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=28.0851063829787, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788502, Length=225, Percent_Identity=28.8888888888889, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=34.4370860927152, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082280, Length=103, Percent_Identity=36.8932038834951, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 68351; Mature: 68351

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51105 PTS_EIIC_TYPE_3 ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSKIFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECHHHHHHHHC
DPRIAVLPIISAYLLRFLSAWKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFAVVAEA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIFLEWLFAPFIEGLQQASLGVQLFMRILLTHVLWCFGVHGDNAYLLLIGVDNGLMQLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
HLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIFNINEILIYGLP
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEHHHHHHCCCC
IIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAYIASGHMSAVFF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHCCHHHHHHH
QVLLIGLGVLIYLPFVRRFSLMSEHYEFDSELIKRVQFQADIDRMTEQHYSQQQSESLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELNLEKTIKEVLAGELQLHYQPKIALSTNHVVGYEALIRLKDEHGKLKGPYFIDAFQRAG
HCCHHHHHHHHHHCHHEEEECCEEEEECCCEECHHHHHEEECCCCCCCCCHHHHHHHHCC
YSHIIDRFVINTVAEDLARWELEGFYPKVSINIDPNNITDPQLLATMNERLGSVANRVEI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
EMLESAFMLDLNRIDNSMKQLKQHGFSFFLDDFGTGFSSLSLLSRINVDGIKLDRSILAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHCCCCCEEECHHHHHC
TCEPKGRTLYLQICKLCNSLGFSLIAEGVETPEEAEFVNAAGVSYVQGWLYAKAMPGPEA
CCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHEECCCCCCC
KAFWLERNSE
CEEEEECCCC
>Mature Secondary Structure
MQLSKIFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECHHHHHHHHC
DPRIAVLPIISAYLLRFLSAWKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFAVVAEA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIFLEWLFAPFIEGLQQASLGVQLFMRILLTHVLWCFGVHGDNAYLLLIGVDNGLMQLVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
HLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIFNINEILIYGLP
HHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHEEEHHHHHHCCCC
IIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAYIASGHMSAVFF
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHCCHHHHHHH
QVLLIGLGVLIYLPFVRRFSLMSEHYEFDSELIKRVQFQADIDRMTEQHYSQQQSESLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELNLEKTIKEVLAGELQLHYQPKIALSTNHVVGYEALIRLKDEHGKLKGPYFIDAFQRAG
HCCHHHHHHHHHHCHHEEEECCEEEEECCCEECHHHHHEEECCCCCCCCCHHHHHHHHCC
YSHIIDRFVINTVAEDLARWELEGFYPKVSINIDPNNITDPQLLATMNERLGSVANRVEI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
EMLESAFMLDLNRIDNSMKQLKQHGFSFFLDDFGTGFSSLSLLSRINVDGIKLDRSILAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHCCCCCEEECHHHHHC
TCEPKGRTLYLQICKLCNSLGFSLIAEGVETPEEAEFVNAAGVSYVQGWLYAKAMPGPEA
CCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHEECCCCCCC
KAFWLERNSE
CEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]