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The map label for this gene is recJ [H]

Identifier: 117921767

GI number: 117921767

Start: 3989883

End: 3991607

Strand: Reverse

Name: recJ [H]

Synonym: Shewana3_3329

Alternate gene names: 117921767

Gene position: 3991607-3989883 (Counterclockwise)

Preceding gene: 117921768

Following gene: 117921766

Centisome position: 80.28

GC content: 53.16

Gene sequence:

>1725_bases
TTGATCCATAAGATAGTCCGTCGTCCAACCGTTGATGATAGCCATTTACCCGCTCACCTTCCGCCGTTATTAAGACAGCT
TTACGCCCGCCGTGGTGTTATGCCCAACGAGTGCGAGCTAGTGCTTAAAGGCCTGTTAAGACCCGATACTATGAAGGGCT
TGGAGCTGGCCGCTAAGTTGATTGCCGATGCGATGCAGCAGGAGAAGTCGATATTGATCGTCGGTGATTTTGATGCCGAC
GGCGCCACTTCAACCAGTGTGTGTTTGTTAGCACTGCGAATGATGGGGGCGAGCAAGGTCGATTATTTGATCCCCAATCG
TTTCGACTACGGTTATGGCCTAAGTCCTGAGATTGTCGCCGTGGCGGCATCCAAACAGGCAGAATTACTTATCACAGTAG
ATAACGGCATTTCCTCGATTGAGGGCGTAGCCGCCGCCAAGGCCTTTGGCATGCAGGTGGTGATCACCGACCATCACTTA
CCCGGCCATGAGTTACCAGATGCCGACGCCATAGTGAATCCCAACCAGCCCGGTTGCCAGTTTGCCAGCAAATCGATTGC
CGGCGTCGGGGTTGCCTTTTATCTGATGACGGCGCTTCGGGCTGAGCTGCGCGCTCGTCATTGGTATCAAGCCCGCGGCA
TTGCCGAGCCAAACCTTGGCACTCTGCTGGATATTGTTGCCCTTGGCACTGTGGCCGACGTGGTGTCGCTCGATGCCAAC
AATCGTATTTTGGTCGAGGCGGGATTGGCGCGGGTACGCAGTGGTCGTTGTCGTGTGGGTATTACCGCCTTACTCGAAGT
GGCGAAACGTAATCCCGCTCGCATTGTCGCCTCGGACTTTGGTTTTGCCGTAGGCCCAAGGCTTAATGCCGCCGGCCGAC
TGGATGAAATGGCGCTTGGGGTTGAAACCCTGCTGTGCGAAGACATTATGTATGCAAGGCGGATGGCGGCAGAACTCGAT
AGCCTCAACCAAGAGCGACGTGAGCTTGAGGTGGGGATGCAGCAAGAGGCGCTTAAAAGTCTTGAATATCTAAAGCTTAA
TGAAGAGCAACTTCCGTGGGGCATCGCCCTCTTTCAAGAGGATTGGCACCAAGGGGTTATCGGTATTCTGGCCTCGCGAA
TTAAAGATAAATACCACAGACCCGTTATCGCCTTTGCCGACGCGGGGAATGGCGAAATTAAAGGCTCGGCGCGCTCCATC
AAAGGTTTGCATATGCGGGATCTGCTGGAGTTGGTTAACTCCCGCCATCCAGGGCTTATCAGCAAATTTGGCGGCCATGC
AATGGCGGCAGGCTTAACCTTAAAGTCCGGCGGCTTCGCAACCTTTGCCAAAGCCTATGATGATGCGGTGCGTGAACTAT
TAAAGCCTGAGCAGCTGACGGGTGAGCTGTGGTCCGATGGCGAATTAACGCCGACGGAACTTACCCTCGAAATTGCTCAG
TTACTTCGTAATGCGGGGCCTTGGGGTCAGTCCTTCGAGGAGCCATTATTCGATGGCTATTTTAAGATTATCCAGCAGCG
AATAGTGGGGGAGCGCCACCTTAAATTAGTGCTTGAAACCCCATGCAGTACTGTGATGTTAGACGCGATTGCCTTTAACG
TGGATTTACACACTTGGCCCGATGCGACAATTCAGCATGCGCGCATCGTTTATAAGCTGGATGTGAACGAATATCGCGGT
AATTTCACCCTGCAGTTGATGGTCGAGCAAATCGAGCCAATGTAG

Upstream 100 bases:

>100_bases
GTAAATAATCCCGTTTCGGATAAATTTATGCCATTAAAGGTGAGCTTAAGGCTCACCTTTTTGTTATCTTAGCCCCATGA
TTGCTTAAGAGTTTGCTCCC

Downstream 100 bases:

>100_bases
TCAGTGATTGCGTGGACGTAAGGTGAAAAGGAGTTCAGTTGAAGCCGTTATCGGATAAAAAAATTCGTCAGTTACTCAAG
CGCTTTGCGTGGATATACGC

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLELAAKLIADAMQQEKSILIVGDFDAD
GATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHL
PGHELPDADAIVNPNQPGCQFASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYARRMAAELD
SLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSI
KGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHARIVYKLDVNEYRG
NFTLQLMVEQIEPM

Sequences:

>Translated_574_residues
MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLELAAKLIADAMQQEKSILIVGDFDAD
GATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHL
PGHELPDADAIVNPNQPGCQFASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYARRMAAELD
SLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSI
KGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHARIVYKLDVNEYRG
NFTLQLMVEQIEPM
>Mature_574_residues
MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLELAAKLIADAMQQEKSILIVGDFDAD
GATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHL
PGHELPDADAIVNPNQPGCQFASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDIMYARRMAAELD
SLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSI
KGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWPDATIQHARIVYKLDVNEYRG
NFTLQLMVEQIEPM

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=571, Percent_Identity=57.092819614711, Blast_Score=672, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 63031; Mature: 63031

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLELAAKL
CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IADAMQQEKSILIVGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVA
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEE
VAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQ
EEECCCCEEEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCEECCCCCCHH
FASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCC
NRILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
CEEEEECCHHHHHCCCCEEHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCHHHHHHH
VETLLCEDIMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
DWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLI
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHCCCCCCHH
SKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
HHHCCCCEEECEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHH
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWP
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHEEEEEECCC
DATIQHARIVYKLDVNEYRGNFTLQLMVEQIEPM
CCHHCCEEEEEEEECHHHCCCEEEEEEEHHHCCC
>Mature Secondary Structure
MIHKIVRRPTVDDSHLPAHLPPLLRQLYARRGVMPNECELVLKGLLRPDTMKGLELAAKL
CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
IADAMQQEKSILIVGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVA
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEE
VAASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQ
EEECCCCEEEEEECCCCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCEECCCCCCHH
FASKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCC
NRILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
CEEEEECCHHHHHCCCCEEHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCHHHHHHH
VETLLCEDIMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEEQLPWGIALFQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
DWHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLI
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHCCCCCCHH
SKFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQ
HHHCCCCEEECEEECCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHH
LLRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPCSTVMLDAIAFNVDLHTWP
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHEEEEEECCC
DATIQHARIVYKLDVNEYRGNFTLQLMVEQIEPM
CCHHCCEEEEEEEECHHHCCCEEEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]