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The map label for this gene is yfiH [H]

Identifier: 117921608

GI number: 117921608

Start: 3809888

End: 3810676

Strand: Reverse

Name: yfiH [H]

Synonym: Shewana3_3170

Alternate gene names: 117921608

Gene position: 3810676-3809888 (Counterclockwise)

Preceding gene: 117921609

Following gene: 117921607

Centisome position: 76.64

GC content: 52.47

Gene sequence:

>789_bases
ATGCTGCTTCACGATTGGCCTGTACCGGACAATGTGGCAATTGCGATGACTGACCGCCACGGCGGTGTGAGTCTCGCGCC
CTACGATAGCCTGAACTTAGGGCTACATGTGGGGGATGCGCCGCAGCAGGTATTGGCTAATCGTGGCATGTTGGCGAAGC
AGTTATGCCTTGCGACTGAGCCTGTGTGGTTGGAGCAAGTTCACGGCACTCAGGTGGTTGATTTGGTCGATATCGTCCCA
ATCAATCTTGCCCAAAATGCTCAATCTGAGAATGTGGCCTTACAAGATTCACCACCTTTGGTGGCCGATGCCAGCTATAC
CGACCTCGCTGGACGTGTGTGTGTGGTGATGACCGCCGATTGTTTGCCAGTACTTCTGTGTAATCAACACGGTACGGAAG
TCGCCGCTGCCCATGCCGGCTGGCGCGGACTCTGTGATGGAGTGATTGAGGCGAGTGTGGCTAAGTTTGCCTCTAAGCCA
AGCGAGCTGATTGCCTATCTAGGGCCTGCCATTGGGCCAGAGACCTTTGAGGTTGGCGCCGAAGTGCGTGCTGCTTTTAT
GGCAACAGATCCAAACGCTGCAAACTGCTTTGTCGCTCAATGTCGGGCAACTAAGCCTGACAAATACCTTGCCGATATTA
TCGGATTAGCCAAATTGCGCTTAAAGAAACTGGGTATTACCCAAGTCTACAGCGCCGATATCTGCACTGTCTCTAACCCT
GATTATTTCTCTTATCGCCGCGATAAAATCACTGGCCGCATGGCTTCATTGATCTGGCTTAAGTCTTAG

Upstream 100 bases:

>100_bases
TGAAATCATGAGCTGGACCGCGCCTATTCCAGAAGACATGGTGATTCTGACCAAAGCGCTGCGTCAAGACACCTTAGAAC
ACCCAGTCGAGTACTAGGCT

Downstream 100 bases:

>100_bases
GTTTATTCCCCTACAATTTGTATTAATTTCCCGCCGTCTTGCTTGAAATCGGTTAAATAGCCCCCATCTTTTAACTAACA
AAATGTTATACCTCATTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLLHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDAPQQVLANRGMLAKQLCLATEPVWLEQVHGTQVVDLVDIVP
INLAQNAQSENVALQDSPPLVADASYTDLAGRVCVVMTADCLPVLLCNQHGTEVAAAHAGWRGLCDGVIEASVAKFASKP
SELIAYLGPAIGPETFEVGAEVRAAFMATDPNAANCFVAQCRATKPDKYLADIIGLAKLRLKKLGITQVYSADICTVSNP
DYFSYRRDKITGRMASLIWLKS

Sequences:

>Translated_262_residues
MLLHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDAPQQVLANRGMLAKQLCLATEPVWLEQVHGTQVVDLVDIVP
INLAQNAQSENVALQDSPPLVADASYTDLAGRVCVVMTADCLPVLLCNQHGTEVAAAHAGWRGLCDGVIEASVAKFASKP
SELIAYLGPAIGPETFEVGAEVRAAFMATDPNAANCFVAQCRATKPDKYLADIIGLAKLRLKKLGITQVYSADICTVSNP
DYFSYRRDKITGRMASLIWLKS
>Mature_262_residues
MLLHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDAPQQVLANRGMLAKQLCLATEPVWLEQVHGTQVVDLVDIVP
INLAQNAQSENVALQDSPPLVADASYTDLAGRVCVVMTADCLPVLLCNQHGTEVAAAHAGWRGLCDGVIEASVAKFASKP
SELIAYLGPAIGPETFEVGAEVRAAFMATDPNAANCFVAQCRATKPDKYLADIIGLAKLRLKKLGITQVYSADICTVSNP
DYFSYRRDKITGRMASLIWLKS

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Escherichia coli, GI1788945, Length=261, Percent_Identity=52.8735632183908, Blast_Score=262, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28082; Mature: 28082

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDAPQQVLANRGMLAKQLCLATE
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHCC
PVWLEQVHGTQVVDLVDIVPINLAQNAQSENVALQDSPPLVADASYTDLAGRVCVVMTAD
CHHHHHCCCCEEEEHHHHEECCHHCCCCCCCEEECCCCCEEECCCCHHHCCCEEEEEECC
CLPVLLCNQHGTEVAAAHAGWRGLCDGVIEASVAKFASKPSELIAYLGPAIGPETFEVGA
CCEEEEECCCCCEEEHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCH
EVRAAFMATDPNAANCFVAQCRATKPDKYLADIIGLAKLRLKKLGITQVYSADICTVSNP
HHEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCC
DYFSYRRDKITGRMASLIWLKS
CHHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MLLHDWPVPDNVAIAMTDRHGGVSLAPYDSLNLGLHVGDAPQQVLANRGMLAKQLCLATE
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHCC
PVWLEQVHGTQVVDLVDIVPINLAQNAQSENVALQDSPPLVADASYTDLAGRVCVVMTAD
CHHHHHCCCCEEEEHHHHEECCHHCCCCCCCEEECCCCCEEECCCCHHHCCCEEEEEECC
CLPVLLCNQHGTEVAAAHAGWRGLCDGVIEASVAKFASKPSELIAYLGPAIGPETFEVGA
CCEEEEECCCCCEEEHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCH
EVRAAFMATDPNAANCFVAQCRATKPDKYLADIIGLAKLRLKKLGITQVYSADICTVSNP
HHEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCC
DYFSYRRDKITGRMASLIWLKS
CHHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1906060; 9205837; 9278503; 2066329 [H]