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The map label for this gene is yebA [H]

Identifier: 117921497

GI number: 117921497

Start: 3665640

End: 3667040

Strand: Direct

Name: yebA [H]

Synonym: Shewana3_3059

Alternate gene names: 117921497

Gene position: 3665640-3667040 (Clockwise)

Preceding gene: 117921495

Following gene: 117921498

Centisome position: 73.72

GC content: 48.39

Gene sequence:

>1401_bases
ATGGGAAAGGTTATAACGTTATTTAAATTGTTGCCTAAAAAGCATCAAATTCTCCTCAGCATTCTTTCTGTTATCACTAC
GATAACCCTGCTCTTTCCCTCTGAAGAAGCACAAGCTTCAAGACAAACTCAAGGTGTCGCAGACCAAGCTCAAGTCAATA
CTCGTTACGATGTTCCTTTAGCCTTTCGCTCACCAGAGCGTCCAGAAGGGGTTGAGGGCCAATCGCAAGATGCATCCACC
AACGCCACGCCGTTATCTTCGGCCGATGCCTTAGCCGCAGGCAATGTGCCCGCCAGCGAAACCTTAGAGAGCGCCCACCA
TAGGGACGTTGAACATTTTAATGTGAAAAATGGCGATACCTTAGCCGCAGTATTTGAGCGTGCGGGACTCACCAGCAAAG
ATGTGTATGAAATTACCCAGTTGCCGCTCGCCAAACAAAATCTGTTAAAAATCATCCCCGGCGAAGAAATTGTGATTTCG
AAGGATGCCAAGGGCGATTTAACCGAAGTGCGCTACCGTGTCGATGCGGTATCGACCTTAGTGATCACTAAGGATCAGGA
TAAGTATTCCGAGAAAATCTCCGAAAAAGACATTGAAATCCGCACCCAATTCACCAGTGCGAAAATCAAGAGTAACTTCT
GGAATGCCGCCGTCGATGCGGGTTTAAACGCGAACCAAATTATGCAACTCTCGACCGTGTTTGGCTGGGATATCGACTTT
GCCTTGGATTTACGTGAAGGCGACAGCTTCGCCATTATCTACGAGCAGGAGTATGCCGAAGGCGAGTTTTTACGTAACGG
CAATATCCTCGCCGCCGAGTTTATCAACCAAGATGAGCGCTACACCGCGATTCGCTATACCGATGGCAACTATTACTCCG
AAAACGGCACTAGCATGCGTAAGGCCTTCCTGCGCTCACCGGTTGACTTTAAATACGTCAGCTCAAACTTCAACCCGAAA
CGCCTACACCCTGTAACCGGGCAAGTTAAGGCCCACCGCGGCGTTGACTATGTTGCCGCCATTGGCACCCCCATTAAGGC
GGCGGGCAATGGCCGAGTTGTCGAATCCGGCTACAATCAATTTAACGGTAACTATGTGTTCATCAAGCACAACGATACCT
ACACGACTAAGTATTTGCATTTGACCAAACGCAACGTCAGTAAAGGGGCCAGCGTTAAGCAGGGGCAAATTATCGGCACC
TTAGGTAAGACAGGACGCGTCACTGGCGCTCACTTACACTATGAATTTATCGTCAATGGCGTACACCGTAATCCAAGAAC
GGTTGATTTGCCTAAGGCCGAATCGATTGCCCGTAAAGAAAAGCCACAATTCGATGCGCTTAGCAAACAGTTGATGGCCA
GTATTTCACAGAACAAGCAAACCCAATTGGCGATGCAATAA

Upstream 100 bases:

>100_bases
CATAAAATGAGGAGACTTATGTTACTTGTTAGCCACCACAATTGAAAGTGTGTACACTAACGGGATTATTCAAGCCTTAG
GTAATCGGTATCGGCGTCAC

Downstream 100 bases:

>100_bases
CGACGGACGGATCCCCTCACATGAACAAGGCTTATTATATTGGACTGATGTCTGGCACCAGCATGGACGGCGTCGATGCG
GTATTAGTCGACTTTGCGGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MGKVITLFKLLPKKHQILLSILSVITTITLLFPSEEAQASRQTQGVADQAQVNTRYDVPLAFRSPERPEGVEGQSQDAST
NATPLSSADALAAGNVPASETLESAHHRDVEHFNVKNGDTLAAVFERAGLTSKDVYEITQLPLAKQNLLKIIPGEEIVIS
KDAKGDLTEVRYRVDAVSTLVITKDQDKYSEKISEKDIEIRTQFTSAKIKSNFWNAAVDAGLNANQIMQLSTVFGWDIDF
ALDLREGDSFAIIYEQEYAEGEFLRNGNILAAEFINQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFNPK
RLHPVTGQVKAHRGVDYVAAIGTPIKAAGNGRVVESGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGT
LGKTGRVTGAHLHYEFIVNGVHRNPRTVDLPKAESIARKEKPQFDALSKQLMASISQNKQTQLAMQ

Sequences:

>Translated_466_residues
MGKVITLFKLLPKKHQILLSILSVITTITLLFPSEEAQASRQTQGVADQAQVNTRYDVPLAFRSPERPEGVEGQSQDAST
NATPLSSADALAAGNVPASETLESAHHRDVEHFNVKNGDTLAAVFERAGLTSKDVYEITQLPLAKQNLLKIIPGEEIVIS
KDAKGDLTEVRYRVDAVSTLVITKDQDKYSEKISEKDIEIRTQFTSAKIKSNFWNAAVDAGLNANQIMQLSTVFGWDIDF
ALDLREGDSFAIIYEQEYAEGEFLRNGNILAAEFINQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFNPK
RLHPVTGQVKAHRGVDYVAAIGTPIKAAGNGRVVESGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGT
LGKTGRVTGAHLHYEFIVNGVHRNPRTVDLPKAESIARKEKPQFDALSKQLMASISQNKQTQLAMQ
>Mature_465_residues
GKVITLFKLLPKKHQILLSILSVITTITLLFPSEEAQASRQTQGVADQAQVNTRYDVPLAFRSPERPEGVEGQSQDASTN
ATPLSSADALAAGNVPASETLESAHHRDVEHFNVKNGDTLAAVFERAGLTSKDVYEITQLPLAKQNLLKIIPGEEIVISK
DAKGDLTEVRYRVDAVSTLVITKDQDKYSEKISEKDIEIRTQFTSAKIKSNFWNAAVDAGLNANQIMQLSTVFGWDIDFA
LDLREGDSFAIIYEQEYAEGEFLRNGNILAAEFINQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFNPKR
LHPVTGQVKAHRGVDYVAAIGTPIKAAGNGRVVESGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTL
GKTGRVTGAHLHYEFIVNGVHRNPRTVDLPKAESIARKEKPQFDALSKQLMASISQNKQTQLAMQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=455, Percent_Identity=30.3296703296703, Blast_Score=205, Evalue=6e-54,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40.9523809523809, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 51694; Mature: 51563

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVITLFKLLPKKHQILLSILSVITTITLLFPSEEAQASRQTQGVADQAQVNTRYDVPL
CCCEEEHHHHCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCHHHHCCCEECCEE
AFRSPERPEGVEGQSQDASTNATPLSSADALAAGNVPASETLESAHHRDVEHFNVKNGDT
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
LAAVFERAGLTSKDVYEITQLPLAKQNLLKIIPGEEIVISKDAKGDLTEVRYRVDAVSTL
HHHHHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEECCCCCCHHHHHEEEEEEEEE
VITKDQDKYSEKISEKDIEIRTQFTSAKIKSNFWNAAVDAGLNANQIMQLSTVFGWDIDF
EEECCCHHHHHHHCCCCEEEEEEEHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCEEE
ALDLREGDSFAIIYEQEYAEGEFLRNGNILAAEFINQDERYTAIRYTDGNYYSENGTSMR
EEEECCCCCEEEEEECCCCCCCEEECCCEEEEHHCCCCCCEEEEEEECCCEECCCCHHHH
KAFLRSPVDFKYVSSNFNPKRLHPVTGQVKAHRGVDYVAAIGTPIKAAGNGRVVESGYNQ
HHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCEEECCCCEEEECCCCC
FNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIVNG
CCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEC
VHRNPRTVDLPKAESIARKEKPQFDALSKQLMASISQNKQTQLAMQ
CCCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
GKVITLFKLLPKKHQILLSILSVITTITLLFPSEEAQASRQTQGVADQAQVNTRYDVPL
CCEEEHHHHCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCCHHHHCCCEECCEE
AFRSPERPEGVEGQSQDASTNATPLSSADALAAGNVPASETLESAHHRDVEHFNVKNGDT
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
LAAVFERAGLTSKDVYEITQLPLAKQNLLKIIPGEEIVISKDAKGDLTEVRYRVDAVSTL
HHHHHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEECCCCCCHHHHHEEEEEEEEE
VITKDQDKYSEKISEKDIEIRTQFTSAKIKSNFWNAAVDAGLNANQIMQLSTVFGWDIDF
EEECCCHHHHHHHCCCCEEEEEEEHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCEEE
ALDLREGDSFAIIYEQEYAEGEFLRNGNILAAEFINQDERYTAIRYTDGNYYSENGTSMR
EEEECCCCCEEEEEECCCCCCCEEECCCEEEEHHCCCCCCEEEEEEECCCEECCCCHHHH
KAFLRSPVDFKYVSSNFNPKRLHPVTGQVKAHRGVDYVAAIGTPIKAAGNGRVVESGYNQ
HHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCEEECCCCEEEECCCCC
FNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIVNG
CCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEC
VHRNPRTVDLPKAESIARKEKPQFDALSKQLMASISQNKQTQLAMQ
CCCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]