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The map label for this gene is lptF [H]

Identifier: 117921444

GI number: 117921444

Start: 3608810

End: 3609922

Strand: Reverse

Name: lptF [H]

Synonym: Shewana3_3005

Alternate gene names: 117921444

Gene position: 3609922-3608810 (Counterclockwise)

Preceding gene: 117921447

Following gene: 117921443

Centisome position: 72.6

GC content: 49.15

Gene sequence:

>1113_bases
GTGATTGTATTTAGATACCTTATTCGAGAAGTTTTAAAGGCGCAAATTGCAGTACTTTTCGTACTGTTAACTATTTTTAT
TAGCCAGCATTTCGTGCGCATATTGGCCGACGCCTCAGACGGTGAATTTCCAGCTTCTCTTATCGCTACCTTGATAGGCC
TCAACTTACCCTATCTTGTTGTTCTCGTTTTACCTTTAAGTTTGTTCCTTGGGATCCTCATGGCCCACGGCCGCATGTAT
GCCGAGAATGAAATGGTCATTCTCCACGGTGTTGGCGTAAGTGAATGGTATGTTACCCGAGTAACTTTGATCCTTGCCGT
TATCAACATGTTGTTTACTGGCTATTTATCCCTCTATGTCGCGCCTTGGGCCGAGGAGCAACAAAACCAAGTGCTCGAGA
AAGCTCAATCCGAGGCGGGCCTTGCCGCATTAGTGCAAGGGCGTTTTCAGGCGAGTCCTAACGGCCGTGCTGTGCTGTTT
GTCGAACGTATCGGCAAGGATAACGATCTGGATAAGGTGTTTGTGGCCCAGTTGCCCGACCCAAATGACGAAATTGGTTT
AACCAACGTGGTCGTGGCGAAGGGCGGGCGGGTACTGGAAGATCAGAACGGCTCGCAGCAGTTACAGCTCAATGATGGGG
TGCGCTATCAGGGCAGCCCACAACAGAAAGACTACCAAATGATTGAATTTGGTGGCTATAAGATGCAAATCAAAGAGCAA
CAGGTCGATGAGCGTCGCCGTAAACTCTCTGCCTTACCGCTGACTGAATTGATGAAAGTCGAAGGACCAGAAGCCGTGGC
TGAGTTCCATTGGCGTTTAGCGATTCCGCTGGCGATTCCTATCATGACACTTATTGCCGTGCCGCTGGCGCGAGTCAATG
TGCGCCAAGGTAAATTTGCCAAAATGCTCCCGGCAGTACTGTTATATCTTGGCTACTTTGGCCTGATGGTCGCGGGACGT
AAAGCCTTGCAGGATGGGGTGATCCCACAATATTTAGGCATGTGGTGGATCCATTTGTCGGCACTCATTATGGGGATTTT
ACTCCTAGGTAAAGACAGACCCTTATTTGCTCGTTTATCGACGGCAATGGCGCGTAAAAAGGTGGCCGCATGA

Upstream 100 bases:

>100_bases
AACCCCTGAAGCTGGTCAGAAAACTACCAAAAGTAAACAGTTTACATGAAAGTTAGTCTGTTACCAGCAAAAAGATAAGT
TTAGAGACCGGATCCTACCT

Downstream 100 bases:

>100_bases
AGATTTTAGACCTTTATATCGCCAGAGTTTTATTAAGTACTTCGGCGCTGTGTTTGCTGGTGCTGACGGGCTTGTCGGGC
ATCATTAAGTGGGTTGACCA

Product: permease YjgP/YjgQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVLPLSLFLGILMAHGRMY
AENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLF
VERIGKDNDLDKVFVAQLPDPNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ
QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFAKMLPAVLLYLGYFGLMVAGR
KALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLSTAMARKKVAA

Sequences:

>Translated_370_residues
MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVLPLSLFLGILMAHGRMY
AENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLF
VERIGKDNDLDKVFVAQLPDPNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ
QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFAKMLPAVLLYLGYFGLMVAGR
KALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLSTAMARKKVAA
>Mature_370_residues
MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVLPLSLFLGILMAHGRMY
AENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLF
VERIGKDNDLDKVFVAQLPDPNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ
QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFAKMLPAVLLYLGYFGLMVAGR
KALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLSTAMARKKVAA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=367, Percent_Identity=37.6021798365123, Blast_Score=207, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41225; Mature: 41225

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHH
VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV
HHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPD
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEECCC
PNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ
CCCCCCCCEEEEECCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEHHH
QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFA
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TAMARKKVAA
HHHHHHHCCC
>Mature Secondary Structure
MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHH
VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV
HHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPD
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEECCC
PNDEIGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQ
CCCCCCCCEEEEECCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEHHH
QVDERRRKLSALPLTELMKVEGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFA
HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KMLPAVLLYLGYFGLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLGKDRPLFARLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TAMARKKVAA
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]