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The map label for this gene is yhaO [H]

Identifier: 117921409

GI number: 117921409

Start: 3570711

End: 3571982

Strand: Reverse

Name: yhaO [H]

Synonym: Shewana3_2970

Alternate gene names: 117921409

Gene position: 3571982-3570711 (Counterclockwise)

Preceding gene: 117921413

Following gene: 117921408

Centisome position: 71.84

GC content: 48.27

Gene sequence:

>1272_bases
ATGGATGCAAGGCTAACGGCGGCACAATGGAAAGAGGATACCCGCTTCGACAGTACGGATTGGGGCTGGATCATTATGAG
TATTGGCATGGCGATTGGCGCTGGGATCGTATTTTTGCCAGTGCAGGTGGGCTTGATGGGCTTGTGGGTGTTCTTGCTCT
CCAGTGTGATTGGTTATCCCGCTATGTATTTGTTTCAGCGTTTGTTTATCAATACCTTGGCAGAGTCGCCCGAATGTAAG
GATTACCCGAGTGTGATTTCGGGGTATCTGGGCAAAAACTGGGGCATCTTACTCGGCGGCTTGTACTTCATTATGTTGGT
GATTTGGGTGTTTGTGTATTCCACGGCCATCACTAACGATAGCGCCTCCTTTTTACAAAGCTTTGGCGCAACTACGTCAT
TATTGTCTGAAAATCCCTTTTATGGCCTAGCGCTGATCTGCGGTTTAGTCGCATTGGCTTCCCGGGGTGAAAACCTATTA
TTTAAGATCTCCACCTTTATGGTGCTCACTAAGCTTGGGGTGGTGGCGGTACTCGGGCTGATGATGGTCGATAAGTGGGA
TATCAATAATATCGGTAGCGTACCCAGCACGGGCGATTGGCTAAAGGATGCGATTGTGATGTTGCCCTTTACGCTGACAT
CGATTCTATTTATCCAAAGTTTAAGCCCTATGGTGATTTCCTATCGTTCGCGGGAGAAATCCCTTGCTGTTGCCCGCTTT
AAGGCGATGCGTGCGATGAACATTGCCTTTGGGGTGCTGTTTGTGGTGGTGTTTTTCTACGCTGTGTCTTTTACCCTCGC
CATGGGACATGAGCAGGCGGTGCGCGCCTCCCATGAAAATATCTCCGCTTTAGCCATGGTGGCCCAGGGGATGCCAGGGC
AAACCTTAAAACTGCTTAGCCTGACCTTAAATATCTTTGCGGTGATGACAGCGTATTTTGGTGTGTATTTAGGGTTTAGG
GAGGCGTGTCAGGGATTGACCATGAATATGCTGCGCCGAGTGATGCCCGAGGAGCGGATCAATAAGTCGTTAGTGGGTTA
CGGCATCATGATCTTTACCATTTTGCTGTCCTGGGGCGCGATTGTATTAAATGCCCCAGTGCTGAGTTTTACCTCTATTT
GCAGTCCTATCTTCGGTTTAGTGGGTTGTTTGATCCCGGCCTATTTGGTTTATCAAGTGCCTGCGCTGCATAAATATAAA
GGGGTGTCGCTGTACATCATTATTGTCACTGGCTTATTGTTATGTATCTCGCCTTTGCTTGCCTTTAGTTAA

Upstream 100 bases:

>100_bases
GACGGCACTTTGTTCAACAAAAGTTGAGTATTTTGTTTGCTGAGTTTGTTTTGTTCAAATATATTTGCAAAAAATAACAT
CAACTCGGTTAGGATGAGAT

Downstream 100 bases:

>100_bases
TGCTTTACCTCCTTTACAAACAGGTATAGCAGTCGTGCTGTACCTGTTTTTTGGCTTCTATTGAGACAAATTGTCTTAAT
TTCCCCGCTATTTACTAGGC

Product: HAAAP family transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MDARLTAAQWKEDTRFDSTDWGWIIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECK
DYPSVISGYLGKNWGILLGGLYFIMLVIWVFVYSTAITNDSASFLQSFGATTSLLSENPFYGLALICGLVALASRGENLL
FKISTFMVLTKLGVVAVLGLMMVDKWDINNIGSVPSTGDWLKDAIVMLPFTLTSILFIQSLSPMVISYRSREKSLAVARF
KAMRAMNIAFGVLFVVVFFYAVSFTLAMGHEQAVRASHENISALAMVAQGMPGQTLKLLSLTLNIFAVMTAYFGVYLGFR
EACQGLTMNMLRRVMPEERINKSLVGYGIMIFTILLSWGAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVYQVPALHKYK
GVSLYIIIVTGLLLCISPLLAFS

Sequences:

>Translated_423_residues
MDARLTAAQWKEDTRFDSTDWGWIIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECK
DYPSVISGYLGKNWGILLGGLYFIMLVIWVFVYSTAITNDSASFLQSFGATTSLLSENPFYGLALICGLVALASRGENLL
FKISTFMVLTKLGVVAVLGLMMVDKWDINNIGSVPSTGDWLKDAIVMLPFTLTSILFIQSLSPMVISYRSREKSLAVARF
KAMRAMNIAFGVLFVVVFFYAVSFTLAMGHEQAVRASHENISALAMVAQGMPGQTLKLLSLTLNIFAVMTAYFGVYLGFR
EACQGLTMNMLRRVMPEERINKSLVGYGIMIFTILLSWGAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVYQVPALHKYK
GVSLYIIIVTGLLLCISPLLAFS
>Mature_423_residues
MDARLTAAQWKEDTRFDSTDWGWIIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECK
DYPSVISGYLGKNWGILLGGLYFIMLVIWVFVYSTAITNDSASFLQSFGATTSLLSENPFYGLALICGLVALASRGENLL
FKISTFMVLTKLGVVAVLGLMMVDKWDINNIGSVPSTGDWLKDAIVMLPFTLTSILFIQSLSPMVISYRSREKSLAVARF
KAMRAMNIAFGVLFVVVFFYAVSFTLAMGHEQAVRASHENISALAMVAQGMPGQTLKLLSLTLNIFAVMTAYFGVYLGFR
EACQGLTMNMLRRVMPEERINKSLVGYGIMIFTILLSWGAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVYQVPALHKYK
GVSLYIIIVTGLLLCISPLLAFS

Specific function: Unknown

COG id: COG0814

COG function: function code E; Amino acid permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid/polyamine transporter 2 family. SdaC/TdcC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693183, Length=424, Percent_Identity=76.8867924528302, Blast_Score=660, Evalue=0.0,
Organism=Escherichia coli, GI1789961, Length=407, Percent_Identity=42.7518427518428, Blast_Score=352, Evalue=3e-98,
Organism=Escherichia coli, GI1789160, Length=432, Percent_Identity=25.462962962963, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1789504, Length=423, Percent_Identity=24.5862884160757, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789211, Length=411, Percent_Identity=22.3844282238443, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004694 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46457; Mature: 46457

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCC
>Mature Secondary Structure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HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]