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The map label for this gene is intA [H]

Identifier: 117921393

GI number: 117921393

Start: 3546379

End: 3547605

Strand: Direct

Name: intA [H]

Synonym: Shewana3_2953

Alternate gene names: 117921393

Gene position: 3546379-3547605 (Clockwise)

Preceding gene: 117921392

Following gene: 117921394

Centisome position: 71.32

GC content: 45.88

Gene sequence:

>1227_bases
ATGCCGCGAATGGCCAAACCGTTAAATGACACAGAAGTTAGGCAAGCTAAACCGAGGGAGAAAGAATACAACCTCAGTGA
TGGCAATGGGCTGATGCTCAGAGTAAGGCCTATCGGTTCCAAAACTTGGCTCCTCAATTACAGCCGCCCCACTTCGCGTA
AACGCGCAAATTTGACCTTAGGCACTTACCCTGAATTAACACTCGCAGATGCTCGGCGCAAAGCTTTAGATGCCCGTAAG
CTTATCGCCCAAGACATTGACCCACAAGAACACCGAGAGGGACAACGGCAAGCGCTCGCAGCAATACATGAACACACATT
CGAGAATGTGGCGACACAATGGTTCGATATCAAGAAAACCGAAATAACCGAGAACCATGCAGCCTCAACCTGGCGTTCCT
TTAAATTGCATGTACTTCCATATATCGGTTCAACTCCCATCAGCCAAATCACGGCTCCGATGGTGATTGAAATATTTCGC
CCTATTGAAGCTAAAGGTTCGTTAGAAACAGTCAAGCGCCTGACTCAACGCCTCAATGAAGTAATGACCTACGCCGTCAA
TACGGGGTTAATTCATGCCAATCCACTTTCTGGTATTAAAGCAGCCTTTAAAAAGCCTAAAAAGCAAAAGATGGCAGCGA
TGGCGCCTTATGAATTACCGGAATTATTATCAACCTTGTCCCGCGCGAGTATTAAACGAGTCACTAGGCTGTTAATAGAA
TGGCAACTGCATACGATGACACGTCCGAATGAAGCAGCAGGTGCTCGTTGGGATGAGTTCAATTTCGATGACCGTTTATG
GACAATCCCGGCTGAACGCATGAAGATGAAGCGGGAGCATGTAATTCCACTTTCTGACGCTTGTATGTTGATATTGCAAG
AACTTAAGAGCATTAGTGGTCATCGAGAATATCTATTCCCTGCTGATCGTAATCCAAAAACACACAGCAATGTGCAAACG
GCTAATGCCGCGCTAAAAAGAATGGGGCTGCAGGACAGAACAACTGCCCACGGTCTTAGAGCCTTAGCCAGCACGACATT
GAATGAACAAGGGTTTGATTGGGATGTTGTTGAAGCAGCGCTCGCTCATACCGACAAAAACCAAGTACGCAGCGCTTATA
ACCGCGCCACATATCTTGAACGTCGAAGAGAAATGATGGAATGGTGGAGTAAAAGTATTAAATCTGCTGAAGCTAACATG
TTAATTCAGTCATTACCCATTAGATAA

Upstream 100 bases:

>100_bases
CACAGTGTACCAACCACCCCAGCCGGTGTTACTAAAAACACCGAAATGCTGTTGTTACAGGGTTTAAGGTGCCCCTTGTT
GTTACTACGAGGAGAGCATA

Downstream 100 bases:

>100_bases
TTTTTAGCGAATGGATGCTCTAAAATGAATAACGCACTAACAGCGATCCACTCATTAAGCCCTTATTTCAAGTTGCCAAT
AGATTTCGTGCCGGTTAGTC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MPRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPELTLADARRKALDARK
LIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFR
PIEAKGSLETVKRLTQRLNEVMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIE
WQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISGHREYLFPADRNPKTHSNVQT
ANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAALAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANM
LIQSLPIR

Sequences:

>Translated_408_residues
MPRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPELTLADARRKALDARK
LIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFR
PIEAKGSLETVKRLTQRLNEVMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIE
WQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISGHREYLFPADRNPKTHSNVQT
ANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAALAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANM
LIQSLPIR
>Mature_407_residues
PRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTLGTYPELTLADARRKALDARKL
IAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKTEITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRP
IEAKGSLETVKRLTQRLNEVMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIEW
QLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISGHREYLFPADRNPKTHSNVQTA
NAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAALAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANML
IQSLPIR

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=402, Percent_Identity=48.7562189054726, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1788690, Length=384, Percent_Identity=32.8125, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI145693166, Length=399, Percent_Identity=33.5839598997494, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46765; Mature: 46634

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTL
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEE
GTYPELTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKT
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQRLNE
HCCCHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIE
HHHHHHHCCEEECCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
WQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISG
HHHHHCCCCCHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
HREYLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAA
CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANMLIQSLPIR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PRMAKPLNDTEVRQAKPREKEYNLSDGNGLMLRVRPIGSKTWLLNYSRPTSRKRANLTL
CCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEE
GTYPELTLADARRKALDARKLIAQDIDPQEHREGQRQALAAIHEHTFENVATQWFDIKKT
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EITENHAASTWRSFKLHVLPYIGSTPISQITAPMVIEIFRPIEAKGSLETVKRLTQRLNE
HCCCHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VMTYAVNTGLIHANPLSGIKAAFKKPKKQKMAAMAPYELPELLSTLSRASIKRVTRLLIE
HHHHHHHCCEEECCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
WQLHTMTRPNEAAGARWDEFNFDDRLWTIPAERMKMKREHVIPLSDACMLILQELKSISG
HHHHHCCCCCHHCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
HREYLFPADRNPKTHSNVQTANAALKRMGLQDRTTAHGLRALASTTLNEQGFDWDVVEAA
CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAHTDKNQVRSAYNRATYLERRREMMEWWSKSIKSAEANMLIQSLPIR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]