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The map label for this gene is ynbD [C]

Identifier: 117921289

GI number: 117921289

Start: 3408620

End: 3410317

Strand: Direct

Name: ynbD [C]

Synonym: Shewana3_2848

Alternate gene names: 117921289

Gene position: 3408620-3410317 (Clockwise)

Preceding gene: 117921288

Following gene: 117921291

Centisome position: 68.55

GC content: 51.47

Gene sequence:

>1698_bases
ATGCTGAGTAGGGTCCACATTAAGTATTTCTATCTGTTCGGAGCGCTGCTATTTGGCTATTTTGCCGTAACGGGGCATTC
TCCCATTCTCACCTTTATTTGGGCATGGAGCAGCCTTTCCCTCGCCCTTGTCGGCTCGGCCTATTGGTTTAATCTCGCCA
GTATTTTTAGAAAACGTCAGGATGGCTCCATCCCTTGGTATATTCGCTGGGGCTTTATTCCGTTTTTATTAGGATGCCGA
CTCTATAATCTCTGGGCGCGGCGCCGCGATAGCGTGCCTTCAATGCAAGCCATTGATAAATATCTATACTTGGGTAGCCG
CTTAAGCGCTGCCGATTTACCTAAACTGAATCGTTATGGCATTACCGCTATTTTAGATGTCACCGCCGAATTCGACGGCC
TCGATGTGTCCCTGTATGAAGAGCATATCGACTATCTGAATATCCCTATTCTTGACCACAGCGTGCCGACTAGCGCCCAA
TTAAATCAGGCGATTAACTGGTTACACCGTCAAGTACGCGCCCAAAAGCGGGTATTAATCCACTGTGCGCTCGGCCGCGG
GCGCTCCGTAATGGTGCTGGCCGCTTATCTTGTGTGCCGCCGTCCCGAACTCAGCTTCGCCGAGGTGCTGCAACAGATTA
AAAGCATTCGTAAAACCGCAGGGTTAAATCGCTGGCAACTCAAAGCGCTGGAGCAGATGTACACTCAAGGGGAAATCAAA
CTGCATAAGCGAGCCTGGATTATCGCCAATCCCGTCTCTGGCGCGGGTAAATGGCAGAGCCATGGCGAACAAATTTGCAC
TGAGCTGAAACGCTATTTTGAGGTGCAGTTAGCGCTCACCACGCCAGAGATTAGCGCCCAAACCCAAGCGAAAAAAGCCC
GACTTCAGGGCGCCGATATCATCATCGCTTGCGGGGGCGATGGCACAGTCACAGAGGTCGCGGCGGAGATTATCGACACC
GATATCACCTTAGGCATTATCCCGCTAGGCACCACTAATGCCCTGTCACACGCCCTCTTTGGTTTAAGCAGTAAGCTCAA
TGCCGTCTCCCAAGCCCTTGATAATATTATCCAAGGCCAGACACAGACTATAGACACGGCGCGTTGCAATGAGCGGCTGG
TGTTACTGCTGGTCGGCATTGGGTTTGAGCAGCAAATGATTGAGTCGGCGAGTCGCGAGCGTAAAAATGCCCTCGGCCAA
CTCGCCTACCTCGATGGTTTGTGGCGCGCGGTGAACACCGACACCAACCTCGAGTTGCAGCTGACTTTAGATGACCAAGC
CCCAATGGCAGTGCAAACCCACAGCCTAGTGGTTGCCAATGCCGCACCTTTTACCAGCTTACTCGCCCAAGGTAAGGGCG
AACCCAATATGACCGACGGCTTGTTGGATATCACTTGGTTAGATTCAAATAATGAGCCAAATGAACAGCTTATCAGTCTG
GCTGAACTGGCTTTTACCGGCTGGATTAAAGAGGCCACCAATAGCGACTCTGCGCCCTCGGCCAACACGGGCAAAGTGAA
ACATGCCCATGCTAAAAGGGTGAAGATCAGCAGTCAGCCCCCATGCAAGTATGTGATTGATGGCGAGATTTGTGAGCCGG
AGGAACTCAATATCGATATCCTGCCCGCCTCTTTGAAGGTGTTTGTGCCCTATCAAGCGCAAAATGCTGAACCGCAGTCA
GAATCCAAAATAAGCTAA

Upstream 100 bases:

>100_bases
GTTCGAGTGAGTACCACAGAGCCACTTTATCGCGACAGACATTGGTTACGATAAAGTGGGTTTCCCTGAGGCTCGCCGTT
TATCGATGGAGAAGATGCCA

Downstream 100 bases:

>100_bases
CACTTTTAAAATCAACTCTGAATCAACCTATGAATCAAATCTGAATCAATGCATTAGCTTATTTTCAGGCATTTTATGTA
GGTCACTACTTGGCGACGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MLSRVHIKYFYLFGALLFGYFAVTGHSPILTFIWAWSSLSLALVGSAYWFNLASIFRKRQDGSIPWYIRWGFIPFLLGCR
LYNLWARRRDSVPSMQAIDKYLYLGSRLSAADLPKLNRYGITAILDVTAEFDGLDVSLYEEHIDYLNIPILDHSVPTSAQ
LNQAINWLHRQVRAQKRVLIHCALGRGRSVMVLAAYLVCRRPELSFAEVLQQIKSIRKTAGLNRWQLKALEQMYTQGEIK
LHKRAWIIANPVSGAGKWQSHGEQICTELKRYFEVQLALTTPEISAQTQAKKARLQGADIIIACGGDGTVTEVAAEIIDT
DITLGIIPLGTTNALSHALFGLSSKLNAVSQALDNIIQGQTQTIDTARCNERLVLLLVGIGFEQQMIESASRERKNALGQ
LAYLDGLWRAVNTDTNLELQLTLDDQAPMAVQTHSLVVANAAPFTSLLAQGKGEPNMTDGLLDITWLDSNNEPNEQLISL
AELAFTGWIKEATNSDSAPSANTGKVKHAHAKRVKISSQPPCKYVIDGEICEPEELNIDILPASLKVFVPYQAQNAEPQS
ESKIS

Sequences:

>Translated_565_residues
MLSRVHIKYFYLFGALLFGYFAVTGHSPILTFIWAWSSLSLALVGSAYWFNLASIFRKRQDGSIPWYIRWGFIPFLLGCR
LYNLWARRRDSVPSMQAIDKYLYLGSRLSAADLPKLNRYGITAILDVTAEFDGLDVSLYEEHIDYLNIPILDHSVPTSAQ
LNQAINWLHRQVRAQKRVLIHCALGRGRSVMVLAAYLVCRRPELSFAEVLQQIKSIRKTAGLNRWQLKALEQMYTQGEIK
LHKRAWIIANPVSGAGKWQSHGEQICTELKRYFEVQLALTTPEISAQTQAKKARLQGADIIIACGGDGTVTEVAAEIIDT
DITLGIIPLGTTNALSHALFGLSSKLNAVSQALDNIIQGQTQTIDTARCNERLVLLLVGIGFEQQMIESASRERKNALGQ
LAYLDGLWRAVNTDTNLELQLTLDDQAPMAVQTHSLVVANAAPFTSLLAQGKGEPNMTDGLLDITWLDSNNEPNEQLISL
AELAFTGWIKEATNSDSAPSANTGKVKHAHAKRVKISSQPPCKYVIDGEICEPEELNIDILPASLKVFVPYQAQNAEPQS
ESKIS
>Mature_565_residues
MLSRVHIKYFYLFGALLFGYFAVTGHSPILTFIWAWSSLSLALVGSAYWFNLASIFRKRQDGSIPWYIRWGFIPFLLGCR
LYNLWARRRDSVPSMQAIDKYLYLGSRLSAADLPKLNRYGITAILDVTAEFDGLDVSLYEEHIDYLNIPILDHSVPTSAQ
LNQAINWLHRQVRAQKRVLIHCALGRGRSVMVLAAYLVCRRPELSFAEVLQQIKSIRKTAGLNRWQLKALEQMYTQGEIK
LHKRAWIIANPVSGAGKWQSHGEQICTELKRYFEVQLALTTPEISAQTQAKKARLQGADIIIACGGDGTVTEVAAEIIDT
DITLGIIPLGTTNALSHALFGLSSKLNAVSQALDNIIQGQTQTIDTARCNERLVLLLVGIGFEQQMIESASRERKNALGQ
LAYLDGLWRAVNTDTNLELQLTLDDQAPMAVQTHSLVVANAAPFTSLLAQGKGEPNMTDGLLDITWLDSNNEPNEQLISL
AELAFTGWIKEATNSDSAPSANTGKVKHAHAKRVKISSQPPCKYVIDGEICEPEELNIDILPASLKVFVPYQAQNAEPQS
ESKIS

Specific function: Unknown

COG id: COG1597

COG function: function code IR; Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DAGKc domain [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=184, Percent_Identity=32.6086956521739, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR004363
- InterPro:   IPR018148
- InterPro:   IPR011607 [H]

Pfam domain/function: PF00781 DAGK_cat; PF02142 MGS [H]

EC number: NA

Molecular weight: Translated: 62747; Mature: 62747

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50056 TYR_PHOSPHATASE_2 ; PS50054 TYR_PHOSPHATASE_DUAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRVHIKYFYLFGALLFGYFAVTGHSPILTFIWAWSSLSLALVGSAYWFNLASIFRKRQ
CCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCC
DGSIPWYIRWGFIPFLLGCRLYNLWARRRDSVPSMQAIDKYLYLGSRLSAADLPKLNRYG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
ITAILDVTAEFDGLDVSLYEEHIDYLNIPILDHSVPTSAQLNQAINWLHRQVRAQKRVLI
CEEEEEEEECCCCCCHHHHHHHCCEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEE
HCALGRGRSVMVLAAYLVCRRPELSFAEVLQQIKSIRKTAGLNRWQLKALEQMYTQGEIK
EEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
LHKRAWIIANPVSGAGKWQSHGEQICTELKRYFEVQLALTTPEISAQTQAKKARLQGADI
EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCE
IIACGGDGTVTEVAAEIIDTDITLGIIPLGTTNALSHALFGLSSKLNAVSQALDNIIQGQ
EEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TQTIDTARCNERLVLLLVGIGFEQQMIESASRERKNALGQLAYLDGLWRAVNTDTNLELQ
CCEECHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LTLDDQAPMAVQTHSLVVANAAPFTSLLAQGKGEPNMTDGLLDITWLDSNNEPNEQLISL
EEECCCCCCEEEECEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
AELAFTGWIKEATNSDSAPSANTGKVKHAHAKRVKISSQPPCKYVIDGEICEPEELNIDI
HHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHEEEECCCCCCEEEECCCCCCCCCCCEEE
LPASLKVFVPYQAQNAEPQSESKIS
EECEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLSRVHIKYFYLFGALLFGYFAVTGHSPILTFIWAWSSLSLALVGSAYWFNLASIFRKRQ
CCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCC
DGSIPWYIRWGFIPFLLGCRLYNLWARRRDSVPSMQAIDKYLYLGSRLSAADLPKLNRYG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
ITAILDVTAEFDGLDVSLYEEHIDYLNIPILDHSVPTSAQLNQAINWLHRQVRAQKRVLI
CEEEEEEEECCCCCCHHHHHHHCCEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEE
HCALGRGRSVMVLAAYLVCRRPELSFAEVLQQIKSIRKTAGLNRWQLKALEQMYTQGEIK
EEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
LHKRAWIIANPVSGAGKWQSHGEQICTELKRYFEVQLALTTPEISAQTQAKKARLQGADI
EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHCCCCCE
IIACGGDGTVTEVAAEIIDTDITLGIIPLGTTNALSHALFGLSSKLNAVSQALDNIIQGQ
EEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TQTIDTARCNERLVLLLVGIGFEQQMIESASRERKNALGQLAYLDGLWRAVNTDTNLELQ
CCEECHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LTLDDQAPMAVQTHSLVVANAAPFTSLLAQGKGEPNMTDGLLDITWLDSNNEPNEQLISL
EEECCCCCCEEEECEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
AELAFTGWIKEATNSDSAPSANTGKVKHAHAKRVKISSQPPCKYVIDGEICEPEELNIDI
HHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHEEEECCCCCCEEEECCCCCCCCCCCEEE
LPASLKVFVPYQAQNAEPQSESKIS
EECEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]