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The map label for this gene is napF [H]

Identifier: 117921225

GI number: 117921225

Start: 3323500

End: 3323985

Strand: Direct

Name: napF [H]

Synonym: Shewana3_2784

Alternate gene names: 117921225

Gene position: 3323500-3323985 (Clockwise)

Preceding gene: 117921224

Following gene: 117921226

Centisome position: 66.84

GC content: 51.03

Gene sequence:

>486_bases
ATGACAGAAAGCATCAATCACAGCCGCCGTAATCTCTTTAGCCGCCGTAAATCCTCGGCCATTAGACCGCCTTGGGTGCG
CGAAGGCATTGAGTTTACTGACATCTGTACCCGATGCACGGCCTGTATCACAGCCTGCGAAACGAAGATTATCTACAAGG
GAGATGGCGGCTTTCCCGAAGTCTCCTTTAAGGACAATGAGTGCACTTTTTGTCGCCGATGTGCGAGCGTCTGCCCGGAA
GAAAAGCTGTTTGATTTGACCCAAACTCCTTGGCAACACAAAGCGGTTATTCAAGATAACTGCTTAACATATCAGGGCAT
TTGGTGCCAAAGTTGTAAGGATGCCTGTGAGCCTCGCGCCATTAGCTTTACCTTAAGCGTGGGTAACGCGCCGATGCCGA
AGATTGATAGCGAGCTTTGCACTGGCTGCGGTGCCTGTGTCGCCCCCTGTCCGAGCCAAGCCATCAGTATTAAGCCTGTA
GAATAA

Upstream 100 bases:

>100_bases
ACCAATCCAAATGGTTATAAAGGCTAAGCGTCTAAATGGCTTGCGGTAACTCCCAAGCCATTTTTATTATCCCTTATCAC
AATTAAACTCCGTAAGACCT

Downstream 100 bases:

>100_bases
CCCTATAGCGTGAGTGTTACTGGGCTTCACGGCGTATTTAGGTTAGTATTTCACGGTCACTATCTCCTCTAATCATCTAG
GTTTCTCATCAGCATGTTTG

Product: ferredoxin-type protein NapF

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTESINHSRRNLFSRRKSSAIRPPWVREGIEFTDICTRCTACITACETKIIYKGDGGFPEVSFKDNECTFCRRCASVCPE
EKLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRAISFTLSVGNAPMPKIDSELCTGCGACVAPCPSQAISIKPV
E

Sequences:

>Translated_161_residues
MTESINHSRRNLFSRRKSSAIRPPWVREGIEFTDICTRCTACITACETKIIYKGDGGFPEVSFKDNECTFCRRCASVCPE
EKLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRAISFTLSVGNAPMPKIDSELCTGCGACVAPCPSQAISIKPV
E
>Mature_160_residues
TESINHSRRNLFSRRKSSAIRPPWVREGIEFTDICTRCTACITACETKIIYKGDGGFPEVSFKDNECTFCRRCASVCPEE
KLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRAISFTLSVGNAPMPKIDSELCTGCGACVAPCPSQAISIKPVE

Specific function: Involved in electron transfer [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1788536, Length=160, Percent_Identity=43.75, Blast_Score=147, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004496 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 17897; Mature: 17765

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
10.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESINHSRRNLFSRRKSSAIRPPWVREGIEFTDICTRCTACITACETKIIYKGDGGFPE
CCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCC
VSFKDNECTFCRRCASVCPEEKLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRA
CEECCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCEECCCCEEECCCHHHHHHHHCCCCE
ISFTLSVGNAPMPKIDSELCTGCGACVAPCPSQAISIKPVE
EEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
TESINHSRRNLFSRRKSSAIRPPWVREGIEFTDICTRCTACITACETKIIYKGDGGFPE
CCCCCHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCC
VSFKDNECTFCRRCASVCPEEKLFDLTQTPWQHKAVIQDNCLTYQGIWCQSCKDACEPRA
CEECCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCEECCCCEEECCCHHHHHHHHCCCCE
ISFTLSVGNAPMPKIDSELCTGCGACVAPCPSQAISIKPVE
EEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]