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The map label for this gene is 117921215

Identifier: 117921215

GI number: 117921215

Start: 3313409

End: 3314185

Strand: Direct

Name: 117921215

Synonym: Shewana3_2774

Alternate gene names: NA

Gene position: 3313409-3314185 (Clockwise)

Preceding gene: 117921203

Following gene: 117921223

Centisome position: 66.64

GC content: 51.22

Gene sequence:

>777_bases
ATGATAAGCCACCATTTCGTTGCCGAAAAATTTATGACCCAAGCAACTGCGATAATTGTGGGCGCTAGCTCACATTTAAG
CCGCGAACTTGCCAAACAATTGGCCGATCAGCAGGTTGAATTAGCCCTTTTTGCCCAAGATGTCGAATCACTCCGCGAAT
TTGCCTCGACCCTGCCCACTAAAGTTCAGGTCTTTTCACTGCAAATTGAACAGCCAAGCGCCATCATCAAGCAACTCGAA
AGCGTTTGGCACGACTTAGGCGGCGCCCACTTAGTCTTAGTGAATACCGGACTCAATAGCTACGATCCTGAGCTGCCATG
GCTACCTGAGCAGGACATTATCAATGTCAATGTGCGGGGCTTTGCCGCTATCTGCAATACGGCATTTAGATTATTTCGCG
AGCAGGGTTATGGCCAACTTGCCGCCATCAACTCGATTGCCGGTCTGCGCGGCGGCCCAAGTGTCGCTTACCATGCCTCT
AAAGCCTTTGCGCAAAACTATTTGGAAGGCTTAAGCATGCATGCCCAGCGGCTTAAGTTGCCCATTACCATTACCGACAT
CCAACTCGGTTTACTGGATAAGGCCGCCATGCAGCAAAGTACGCTATGGCTTGCCCCGCTCCCGCAAGTCGCGGCGCAGA
TCATTAAGGCCATGCAGCAGGGTAAACGCCGCGTGTATGTGACCAAGCGTTGGCGCTTAGTGGCTTGGCTAACGAAATTG
CTGCCAGAGTTTATCTACAACACGCGCCACTGGAAGCCGAAAAAGGCTAAAAAGTAG

Upstream 100 bases:

>100_bases
TTAACCCTTGTCTCATTTCATTTCTCCTAATCATACATAAAGACTTCTGGATGTCTATACGCCCAAGCTATAAATCTTGT
CATGCTGGGCATATCTTCCT

Downstream 100 bases:

>100_bases
TGTTATGCCGCGTTTCGCTTTATAAACTGCGAAAAACAAAAAAGGAGCCACTGGCTCCTTTTTTGTTACTTTAAAATCAG
ATGATTAGAAAGTGTAACCC

Product: short chain dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MISHHFVAEKFMTQATAIIVGASSHLSRELAKQLADQQVELALFAQDVESLREFASTLPTKVQVFSLQIEQPSAIIKQLE
SVWHDLGGAHLVLVNTGLNSYDPELPWLPEQDIINVNVRGFAAICNTAFRLFREQGYGQLAAINSIAGLRGGPSVAYHAS
KAFAQNYLEGLSMHAQRLKLPITITDIQLGLLDKAAMQQSTLWLAPLPQVAAQIIKAMQQGKRRVYVTKRWRLVAWLTKL
LPEFIYNTRHWKPKKAKK

Sequences:

>Translated_258_residues
MISHHFVAEKFMTQATAIIVGASSHLSRELAKQLADQQVELALFAQDVESLREFASTLPTKVQVFSLQIEQPSAIIKQLE
SVWHDLGGAHLVLVNTGLNSYDPELPWLPEQDIINVNVRGFAAICNTAFRLFREQGYGQLAAINSIAGLRGGPSVAYHAS
KAFAQNYLEGLSMHAQRLKLPITITDIQLGLLDKAAMQQSTLWLAPLPQVAAQIIKAMQQGKRRVYVTKRWRLVAWLTKL
LPEFIYNTRHWKPKKAKK
>Mature_258_residues
MISHHFVAEKFMTQATAIIVGASSHLSRELAKQLADQQVELALFAQDVESLREFASTLPTKVQVFSLQIEQPSAIIKQLE
SVWHDLGGAHLVLVNTGLNSYDPELPWLPEQDIINVNVRGFAAICNTAFRLFREQGYGQLAAINSIAGLRGGPSVAYHAS
KAFAQNYLEGLSMHAQRLKLPITITDIQLGLLDKAAMQQSTLWLAPLPQVAAQIIKAMQQGKRRVYVTKRWRLVAWLTKL
LPEFIYNTRHWKPKKAKK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 28919; Mature: 28919

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISHHFVAEKFMTQATAIIVGASSHLSRELAKQLADQQVELALFAQDVESLREFASTLPT
CCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVQVFSLQIEQPSAIIKQLESVWHDLGGAHLVLVNTGLNSYDPELPWLPEQDIINVNVRG
EEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECHHH
FAAICNTAFRLFREQGYGQLAAINSIAGLRGGPSVAYHASKAFAQNYLEGLSMHAQRLKL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PITITDIQLGLLDKAAMQQSTLWLAPLPQVAAQIIKAMQQGKRRVYVTKRWRLVAWLTKL
CEEEEEHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
LPEFIYNTRHWKPKKAKK
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MISHHFVAEKFMTQATAIIVGASSHLSRELAKQLADQQVELALFAQDVESLREFASTLPT
CCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVQVFSLQIEQPSAIIKQLESVWHDLGGAHLVLVNTGLNSYDPELPWLPEQDIINVNVRG
EEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECHHH
FAAICNTAFRLFREQGYGQLAAINSIAGLRGGPSVAYHASKAFAQNYLEGLSMHAQRLKL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PITITDIQLGLLDKAAMQQSTLWLAPLPQVAAQIIKAMQQGKRRVYVTKRWRLVAWLTKL
CEEEEEHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
LPEFIYNTRHWKPKKAKK
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]