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The map label for this gene is cph2 [H]

Identifier: 117921198

GI number: 117921198

Start: 3291098

End: 3292117

Strand: Direct

Name: cph2 [H]

Synonym: Shewana3_2757

Alternate gene names: 117921198

Gene position: 3291098-3292117 (Clockwise)

Preceding gene: 117921197

Following gene: 117921199

Centisome position: 66.19

GC content: 50.2

Gene sequence:

>1020_bases
ATGACAAACTCACCGAAACTGGCACGCCAACAACCCGCCTTATCCATTGTCGATGATGCTGCATTGGCCGCAACTCAGCA
TGCAAAGGCTGCCGAGCTACCGCTGAACTTTTTCGAGCATTCTTCCCTCGAGACCATTGAACTCTTTATTCAACATTTAA
CCGAGCCAGTGATCCTAGTGAATGCCAACGGCTTTATCCGTTCGTGCAATCAACGTAGTGCCGAGCTGCTCGATTGCCCG
CAGGCGAGTTTAAAGGGCCAAGACTGGCGCAATTTTTTGACCGAACATCATCAAGCGCGCTACGACAATCTCCTGAGTCA
CGATGTGCAACTAGGCACCAATTGTGGTCACCCCGTGCAGCACCCTGCGCAGGAAACCACGCTGATCTGCGCCTCTGGCA
AAGCCAAAGATGTTGAGTTGTCTATCTCTTATATTCCTAGCCATGAACCTGTGTTTGTGATGGTGATGCACGATTTAACT
CAACATAAGGCGGAAAACCTCAAGCTGCGTAAATTGGCCGCCACCGACTCCCTCACCCAACTGGCGAACCGTCGCTATTT
TGATGAAATGCTGCAACAGCAATGGGAAGAATGCACCGCCAAACTGCGTCCCATCAGCGTAGTCATTATCGATGTGGATT
ATTTTAAGGTGTTTAATGACCAGTTTGGTCATATCCAAGGTGATGAATGCCTTAGAAAAATCGCCAAAGTGATCGCCAAT
ATTGTGCCTATCGACATCGGTCTTGCGGCCCGTTACGGCGGCGAAGAGTTTGCGCTGATCCTGCCTAATCACAATGCCAA
AATGGCGCTGACCATAGCGCAAAAAATTCAGCAAGAGATTAATGATATTCGCTTTACTGACCAAGGACTTAGGGATTATG
TCTCGATAAGCGCCAGCCAAGGGATTGCCAGTGAAGTTAATGGCCAGTTCCGTACTTCACTCGCCATGGTGTGCGCCGCC
GATACCGCGCTTTACCGCGCCAAGGCCGATGGTCGTGACCGGATAAACGCCTCACTGTAG

Upstream 100 bases:

>100_bases
CCAGAAGATAAGCAGAAGGTATCTTTTCTTCCGCCAGAATAAAGTCATCCTCAGAAAAGCGCCTAGCGCAGATGATTAAA
GTTCACGGAGAAAGATAACA

Downstream 100 bases:

>100_bases
GCAGTGGTGATTGCAGCGTAAGCAATCGTAAGGGAATGAAATTAAACAAGGATGTTGCCCATGAAAACGCCGAATACACC
CCATAACACTTCGGATACCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTNSPKLARQQPALSIVDDAALAATQHAKAAELPLNFFEHSSLETIELFIQHLTEPVILVNANGFIRSCNQRSAELLDCP
QASLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGHPVQHPAQETTLICASGKAKDVELSISYIPSHEPVFVMVMHDLT
QHKAENLKLRKLAATDSLTQLANRRYFDEMLQQQWEECTAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIAN
IVPIDIGLAARYGGEEFALILPNHNAKMALTIAQKIQQEINDIRFTDQGLRDYVSISASQGIASEVNGQFRTSLAMVCAA
DTALYRAKADGRDRINASL

Sequences:

>Translated_339_residues
MTNSPKLARQQPALSIVDDAALAATQHAKAAELPLNFFEHSSLETIELFIQHLTEPVILVNANGFIRSCNQRSAELLDCP
QASLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGHPVQHPAQETTLICASGKAKDVELSISYIPSHEPVFVMVMHDLT
QHKAENLKLRKLAATDSLTQLANRRYFDEMLQQQWEECTAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIAN
IVPIDIGLAARYGGEEFALILPNHNAKMALTIAQKIQQEINDIRFTDQGLRDYVSISASQGIASEVNGQFRTSLAMVCAA
DTALYRAKADGRDRINASL
>Mature_338_residues
TNSPKLARQQPALSIVDDAALAATQHAKAAELPLNFFEHSSLETIELFIQHLTEPVILVNANGFIRSCNQRSAELLDCPQ
ASLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGHPVQHPAQETTLICASGKAKDVELSISYIPSHEPVFVMVMHDLTQ
HKAENLKLRKLAATDSLTQLANRRYFDEMLQQQWEECTAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIANI
VPIDIGLAARYGGEEFALILPNHNAKMALTIAQKIQQEINDIRFTDQGLRDYVSISASQGIASEVNGQFRTSLAMVCAAD
TALYRAKADGRDRINASL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=217, Percent_Identity=32.258064516129, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1786584, Length=213, Percent_Identity=30.0469483568075, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=40.9937888198758, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=192, Percent_Identity=32.8125, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=34.1317365269461, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.3293413173653, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=32.9268292682927, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=33.5227272727273, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787816, Length=177, Percent_Identity=31.0734463276836, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=33.1360946745562, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=30.3571428571429, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37799; Mature: 37668

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSPKLARQQPALSIVDDAALAATQHAKAAELPLNFFEHSSLETIELFIQHLTEPVILV
CCCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHCCHHHHHCCCHHHHHHHHHHCCCCEEEE
NANGFIRSCNQRSAELLDCPQASLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGHPVQ
ECCHHHHCCCCCCHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCC
HPAQETTLICASGKAKDVELSISYIPSHEPVFVMVMHDLTQHKAENLKLRKLAATDSLTQ
CCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEEHHHHHHHHHCCEEHHHHHHHHHHH
LANRRYFDEMLQQQWEECTAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIAN
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IVPIDIGLAARYGGEEFALILPNHNAKMALTIAQKIQQEINDIRFTDQGLRDYVSISASQ
HCCCCCCEEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
GIASEVNGQFRTSLAMVCAADTALYRAKADGRDRINASL
CCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TNSPKLARQQPALSIVDDAALAATQHAKAAELPLNFFEHSSLETIELFIQHLTEPVILV
CCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHCCHHHHHCCCHHHHHHHHHHCCCCEEEE
NANGFIRSCNQRSAELLDCPQASLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGHPVQ
ECCHHHHCCCCCCHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCC
HPAQETTLICASGKAKDVELSISYIPSHEPVFVMVMHDLTQHKAENLKLRKLAATDSLTQ
CCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEEHHHHHHHHHCCEEHHHHHHHHHHH
LANRRYFDEMLQQQWEECTAKLRPISVVIIDVDYFKVFNDQFGHIQGDECLRKIAKVIAN
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IVPIDIGLAARYGGEEFALILPNHNAKMALTIAQKIQQEINDIRFTDQGLRDYVSISASQ
HCCCCCCEEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
GIASEVNGQFRTSLAMVCAADTALYRAKADGRDRINASL
CCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]