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The map label for this gene is ycaR [C]

Identifier: 117921023

GI number: 117921023

Start: 3086265

End: 3086444

Strand: Reverse

Name: ycaR [C]

Synonym: Shewana3_2582

Alternate gene names: 117921023

Gene position: 3086444-3086265 (Counterclockwise)

Preceding gene: 117921024

Following gene: 117921021

Centisome position: 62.07

GC content: 42.22

Gene sequence:

>180_bases
ATGGCGTTTGATAAAAAACTGTTAGACATAGTCGCTTGCCCTGTGTGCAAGGGAAAATTGGAATACGATAAAACAACGCA
GCAATTGATTTGTAAGGCAGACAAATTAGCCTATCCAATCACGGATGGGATCCCTGTGTTACTCGAAAACCGTGCAGTTC
CCTTAAACGAAGCGGTTTAA

Upstream 100 bases:

>100_bases
TGGTGGTATTTGGCTGTGGATGCCAAGCTATCGCCACAATTTGATCAACAGCTGCTGAGCCGTGTGCGCTCTGTGGCTGC
AGCTAAACAAGGAAAATCCC

Downstream 100 bases:

>100_bases
TTGCAGACTGAATGAATTGGGGCTTTGATTTAGCGTTCAGTGAGTTAGCTAAGTAAAGCGTTGAAATAAGGGCGATAACC
TCGCCCTTATTTTTTCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 58

Protein sequence:

>59_residues
MAFDKKLLDIVACPVCKGKLEYDKTTQQLICKADKLAYPITDGIPVLLENRAVPLNEAV

Sequences:

>Translated_59_residues
MAFDKKLLDIVACPVCKGKLEYDKTTQQLICKADKLAYPITDGIPVLLENRAVPLNEAV
>Mature_58_residues
AFDKKLLDIVACPVCKGKLEYDKTTQQLICKADKLAYPITDGIPVLLENRAVPLNEAV

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=50, Percent_Identity=62, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2420_SHESM (Q0HHH6)

Other databases:

- EMBL:   CP000446
- RefSeq:   YP_734548.1
- ProteinModelPortal:   Q0HHH6
- SMR:   Q0HHH6
- STRING:   Q0HHH6
- GeneID:   4252991
- GenomeReviews:   CP000446_GR
- KEGG:   she:Shewmr4_2420
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- ProtClustDB:   CLSK906869
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6519; Mature: 6388

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDKKLLDIVACPVCKGKLEYDKTTQQLICKADKLAYPITDGIPVLLENRAVPLNEAV
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
AFDKKLLDIVACPVCKGKLEYDKTTQQLICKADKLAYPITDGIPVLLENRAVPLNEAV
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA