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The map label for this gene is yjjU [H]

Identifier: 117920991

GI number: 117920991

Start: 3049424

End: 3050431

Strand: Reverse

Name: yjjU [H]

Synonym: Shewana3_2550

Alternate gene names: 117920991

Gene position: 3050431-3049424 (Counterclockwise)

Preceding gene: 117920992

Following gene: 117920985

Centisome position: 61.35

GC content: 49.8

Gene sequence:

>1008_bases
ATGCCGCCGATTAGCCATTTATCTTCTGCCTCTCAATCTGTTACCGCGCCGAAAGTGGCGTTAATTGCAGAAGGCGGTGG
CCAGCGTGGCATTTTTACCGCAGGCGTACTCGATGCTTGGCTTGAGGCGGAGTTCGACCCCTTCGATTTATTGATTGGTA
CCTCAGCAGGCTCGCAAAACTTGACCAGTTTTTTAGCCAGACAAAAGGGTTACGCCAAAAAACTCATCCGAGGGCTAACG
CGCCATAAACGCTTTTATCAACTAGGACGCGGTTTGATTGGTGCCAACGTTATCGATCTTGACTGGTATTTTGAGCAGAC
TCAGCGTGGCAGCTTTAAGCTGGATTTAGCTGCGGCGAGTCAATCCCTCAATGGGCGAGAACTCCTTATTACGACTACAC
GAGTGTCTGATCGCCAAGGGTATTTCTTGAGTCCAACCAGTCATGAGCACTGGCGTGAACTACTCAAAGCCTCTAGCGCC
TTGCCTTTTTTATATAAACAGGGGGTCAAGTTAACGCCTTGGTTAGGGATTGAATCTGCTAATCATGTTGAAGCGACACT
CGAACCCGAGCAAGACTTTTACCTCGATGGCGGTTTAGCGGCGCCGCTGCCCGTGCGAGAGGCGTACAAACGGGGCGCCC
GTAAAATTGTGGTCGTGAGAACAGTCAATGAGGACTTTCAAGCCCAATCGGCTTGGGTACATAAGCTTAAATCGTGGATC
TGTGTCTCTGGCTTTTGCCCTAAGACCATTGATTACTTAGTGCAGCATGAAGAAGCCTATCAGGCCGAGTTAGACTTTAT
TGCCAATCCTCCCGATGATGTTGAAATTGTGCAGATTTTTGCGAAGGCGCCATTACAGAGCAAGCTGTTAGGCAGTACAG
ATGTGGATTTACGCATTGATTATCAGCAAGGGATAAAGGCGGGGAAGGCGTTTCTTGCAACGTCTTCTGGGCAAATTGCC
AAGGCTAAAGATGCGACGCCCGTTGCACCGCTGGCGATATCGGCCTAG

Upstream 100 bases:

>100_bases
GATTACAACGATAGATTCTATCCGTTTTTGACTGTGACAATCTTTGTTTAGACTGAGCTTATCTATTCTCCATTGCGTCT
TTGTTGCGATAAGGTCAGTT

Downstream 100 bases:

>100_bases
GTTATTTGTTCGATCTCAAGGTGATATTTCAAAGCAGCATTTATGTTTGGCGCCATGTGGTCAAGCTAAATCCAAGTCTT
AAAGAGTTAGATAGTTAAAG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MPPISHLSSASQSVTAPKVALIAEGGGQRGIFTAGVLDAWLEAEFDPFDLLIGTSAGSQNLTSFLARQKGYAKKLIRGLT
RHKRFYQLGRGLIGANVIDLDWYFEQTQRGSFKLDLAAASQSLNGRELLITTTRVSDRQGYFLSPTSHEHWRELLKASSA
LPFLYKQGVKLTPWLGIESANHVEATLEPEQDFYLDGGLAAPLPVREAYKRGARKIVVVRTVNEDFQAQSAWVHKLKSWI
CVSGFCPKTIDYLVQHEEAYQAELDFIANPPDDVEIVQIFAKAPLQSKLLGSTDVDLRIDYQQGIKAGKAFLATSSGQIA
KAKDATPVAPLAISA

Sequences:

>Translated_335_residues
MPPISHLSSASQSVTAPKVALIAEGGGQRGIFTAGVLDAWLEAEFDPFDLLIGTSAGSQNLTSFLARQKGYAKKLIRGLT
RHKRFYQLGRGLIGANVIDLDWYFEQTQRGSFKLDLAAASQSLNGRELLITTTRVSDRQGYFLSPTSHEHWRELLKASSA
LPFLYKQGVKLTPWLGIESANHVEATLEPEQDFYLDGGLAAPLPVREAYKRGARKIVVVRTVNEDFQAQSAWVHKLKSWI
CVSGFCPKTIDYLVQHEEAYQAELDFIANPPDDVEIVQIFAKAPLQSKLLGSTDVDLRIDYQQGIKAGKAFLATSSGQIA
KAKDATPVAPLAISA
>Mature_334_residues
PPISHLSSASQSVTAPKVALIAEGGGQRGIFTAGVLDAWLEAEFDPFDLLIGTSAGSQNLTSFLARQKGYAKKLIRGLTR
HKRFYQLGRGLIGANVIDLDWYFEQTQRGSFKLDLAAASQSLNGRELLITTTRVSDRQGYFLSPTSHEHWRELLKASSAL
PFLYKQGVKLTPWLGIESANHVEATLEPEQDFYLDGGLAAPLPVREAYKRGARKIVVVRTVNEDFQAQSAWVHKLKSWIC
VSGFCPKTIDYLVQHEEAYQAELDFIANPPDDVEIVQIFAKAPLQSKLLGSTDVDLRIDYQQGIKAGKAFLATSSGQIAK
AKDATPVAPLAISA

Specific function: Probable lipid hydrolase [H]

COG id: COG4667

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Escherichia coli, GI1790837, Length=298, Percent_Identity=38.5906040268456, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 36759; Mature: 36628

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPISHLSSASQSVTAPKVALIAEGGGQRGIFTAGVLDAWLEAEFDPFDLLIGTSAGSQN
CCCHHHHHHCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCCEEEEEECCCCCHH
LTSFLARQKGYAKKLIRGLTRHKRFYQLGRGLIGANVIDLDWYFEQTQRGSFKLDLAAAS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCEEEEEHHHHHHCCCCCEEEEEEHHC
QSLNGRELLITTTRVSDRQGYFLSPTSHEHWRELLKASSALPFLYKQGVKLTPWLGIESA
CCCCCCEEEEEEEEECCCCCEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCEECCCCC
NHVEATLEPEQDFYLDGGLAAPLPVREAYKRGARKIVVVRTVNEDFQAQSAWVHKLKSWI
CCEEEEECCCCCEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHE
CVSGFCPKTIDYLVQHEEAYQAELDFIANPPDDVEIVQIFAKAPLQSKLLGSTDVDLRID
EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEEE
YQQGIKAGKAFLATSSGQIAKAKDATPVAPLAISA
HHHHHHHCCEEEEECCCCEEECCCCCCCCCEEECC
>Mature Secondary Structure 
PPISHLSSASQSVTAPKVALIAEGGGQRGIFTAGVLDAWLEAEFDPFDLLIGTSAGSQN
CCHHHHHHCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCCEEEEEECCCCCHH
LTSFLARQKGYAKKLIRGLTRHKRFYQLGRGLIGANVIDLDWYFEQTQRGSFKLDLAAAS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCEEEEEHHHHHHCCCCCEEEEEEHHC
QSLNGRELLITTTRVSDRQGYFLSPTSHEHWRELLKASSALPFLYKQGVKLTPWLGIESA
CCCCCCEEEEEEEEECCCCCEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCEECCCCC
NHVEATLEPEQDFYLDGGLAAPLPVREAYKRGARKIVVVRTVNEDFQAQSAWVHKLKSWI
CCEEEEECCCCCEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHE
CVSGFCPKTIDYLVQHEEAYQAELDFIANPPDDVEIVQIFAKAPLQSKLLGSTDVDLRID
EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEEE
YQQGIKAGKAFLATSSGQIAKAKDATPVAPLAISA
HHHHHHHCCEEEEECCCCEEECCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]