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The map label for this gene is slyD [H]

Identifier: 117920901

GI number: 117920901

Start: 2947381

End: 2947869

Strand: Reverse

Name: slyD [H]

Synonym: Shewana3_2458

Alternate gene names: 117920901

Gene position: 2947869-2947381 (Counterclockwise)

Preceding gene: 117920902

Following gene: 117920899

Centisome position: 59.29

GC content: 51.12

Gene sequence:

>489_bases
ATGAGCATTAAAGACGATATGGTTGTGCAGTTTAACTACACTCTGCGCGACGAAAAAGGCGAAGTGATCGAGACGAACGA
AGGTCGCGAGCCGATTGCTTACTTACACGGCCATGACAACATGATGCCAGGTGTAGAGAATGCGATTAATGGTAAAGCGA
TTGGTGAAAAATTCACCGTTACTCTGCCATGTACTGAAACCTATGGTCAGCGTATCGAAGGTGAAGCGGCGCAGCAACGT
GTGTCTGTGAAGCACCTGTTAGGCGCTAGCGTGTGGAAGCCAGGCATGACGGCTGTGGTTCACACTGATCAGGGTCAACG
CCAAGTGACTATCGTCAAAGTGGGTAAGTTTATGGCGACTGTGGATGTTAACCATCCATTAGCGGGCCGTGACTTAACCT
TCGATATCGAAGTGGTTGGCGCCCGTGATGCGACCGATGAAGAAATCGCCCACGGTCATGCCCACGGTGTAGGCGGTCAC
CACCACTAA

Upstream 100 bases:

>100_bases
GCTTTGGTGAGGCATCGCAGGGATAAAACAGTGGAGTGCAAAGGCCAGTTTTGTTAAGCTCGGCCGACATTTGAAATCGA
AGCAAATCAAAGGATATTCG

Downstream 100 bases:

>100_bases
TCTGCGTGGTTGCTCCCATCAATACTCTGCTACAGCAGGGGTACTCGGGAGTAATGACCAGATAAGTAAAAAAAAGCCCA
AACCTAGGTTTGGGCTTTTT

Product: peptidylprolyl isomerase, FKBP-type

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSIKDDMVVQFNYTLRDEKGEVIETNEGREPIAYLHGHDNMMPGVENAINGKAIGEKFTVTLPCTETYGQRIEGEAAQQR
VSVKHLLGASVWKPGMTAVVHTDQGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEVVGARDATDEEIAHGHAHGVGGH
HH

Sequences:

>Translated_162_residues
MSIKDDMVVQFNYTLRDEKGEVIETNEGREPIAYLHGHDNMMPGVENAINGKAIGEKFTVTLPCTETYGQRIEGEAAQQR
VSVKHLLGASVWKPGMTAVVHTDQGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEVVGARDATDEEIAHGHAHGVGGH
HH
>Mature_161_residues
SIKDDMVVQFNYTLRDEKGEVIETNEGREPIAYLHGHDNMMPGVENAINGKAIGEKFTVTLPCTETYGQRIEGEAAQQRV
SVKHLLGASVWKPGMTAVVHTDQGQRQVTIVKVGKFMATVDVNHPLAGRDLTFDIEVVGARDATDEEIAHGHAHGVGGHH
H

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=151, Percent_Identity=38.4105960264901, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17717; Mature: 17586

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKDDMVVQFNYTLRDEKGEVIETNEGREPIAYLHGHDNMMPGVENAINGKAIGEKFTV
CCCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
TLPCTETYGQRIEGEAAQQRVSVKHLLGASVWKPGMTAVVHTDQGQRQVTIVKVGKFMAT
EECCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEEE
VDVNHPLAGRDLTFDIEVVGARDATDEEIAHGHAHGVGGHHH
EECCCCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIKDDMVVQFNYTLRDEKGEVIETNEGREPIAYLHGHDNMMPGVENAINGKAIGEKFTV
CCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
TLPCTETYGQRIEGEAAQQRVSVKHLLGASVWKPGMTAVVHTDQGQRQVTIVKVGKFMAT
EECCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEEE
VDVNHPLAGRDLTFDIEVVGARDATDEEIAHGHAHGVGGHHH
EECCCCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]