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The map label for this gene is rraA [C]

Identifier: 117920816

GI number: 117920816

Start: 2852548

End: 2853042

Strand: Reverse

Name: rraA [C]

Synonym: Shewana3_2373

Alternate gene names: 117920816

Gene position: 2853042-2852548 (Counterclockwise)

Preceding gene: 117920818

Following gene: 117920815

Centisome position: 57.38

GC content: 48.28

Gene sequence:

>495_bases
ATGCTTGATCTATTGCCTGATTTGTTCGATCACTACCCTACAAAACTGTCGCTGTTACCGCTCGATTTTCGCAGTTTTGG
TGGTAAGCGTCTGTTTTGGGGTGAAGTTGTGACGGTCAAATGTTTTGAAGATAACTCCAAAGTGAAAGAAGTGCTGGCCC
AGCCCGGTCATGGAAAAGTATTGGTCGTCGATGGTGGCGGTTCACCCCGGCGGGCGTTACTTGGGGATTTGATCGCGCAA
AGTGCCCTCGATAACGGTTGGCAAGGTGTGGTGATTAATGGCTATGTCCGTGATGTGGCAAGGCTTTCCACTTTTAATCT
CGGCGTCTATGCCCTAGGGGCTATGCCGATCAAGACCGAAAAATTAAACCAAGGTCACATCGATGTGCCGATTGAGTTTG
GCGCTGTGACAGTAAAACCCGGCATGATGCTTTATGCCGATGAGAATGGTATTGCCGTGAGCGAGGCATCATTAAACTTT
GCCTTTCTAAGTTAA

Upstream 100 bases:

>100_bases
ATTTAAAGTGTAAACCTCATTAAAAAGTCGAGTTTCGCATTGGGCTTGTAGGGGTCTACAATAATGGTTAGTCTAAACTT
TTCACTTCGCGGAGATCCAA

Downstream 100 bases:

>100_bases
GTGTTACCAAAAATTCAAGATGTTATTGATAAGGATGTTTCTATGAAATTCATTAAGTGGCTTTTAGCTCTTCTGGTGAC
CTTAGTGGTTGCAGTCACCT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKVLVVDGGGSPRRALLGDLIAQ
SALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTEKLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNF
AFLS

Sequences:

>Translated_164_residues
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKVLVVDGGGSPRRALLGDLIAQ
SALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTEKLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNF
AFLS
>Mature_164_residues
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKVLVVDGGGSPRRALLGDLIAQ
SALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTEKLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNF
AFLS

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=155, Percent_Identity=43.2258064516129, Blast_Score=127, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17779; Mature: 17779

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKV
CCCCCHHHHHCCCCEEEEEEECHHHCCCCEEEEEEEEEEEEECCCHHHHHHHCCCCCCEE
LVVDGGGSPRRALLGDLIAQSALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTE
EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEECCEEECC
KLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNFAFLS
CCCCCCEEEEEEECEEEECCCEEEEECCCCEEEEECCEEEEEEC
>Mature Secondary Structure
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKV
CCCCCHHHHHCCCCEEEEEEECHHHCCCCEEEEEEEEEEEEECCCHHHHHHHCCCCCCEE
LVVDGGGSPRRALLGDLIAQSALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTE
EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEECCEEECC
KLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNFAFLS
CCCCCCEEEEEEECEEEECCCEEEEECCCCEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]