Click here to switch to the map view.

The map label for this gene is insF1 [H]

Identifier: 117920804

GI number: 117920804

Start: 2838414

End: 2838917

Strand: Direct

Name: insF1 [H]

Synonym: Shewana3_2361

Alternate gene names: 117920804

Gene position: 2838414-2838917 (Clockwise)

Preceding gene: 117920803

Following gene: 117920805

Centisome position: 57.09

GC content: 42.26

Gene sequence:

>504_bases
ATGGCTTGGGTAACGGATATTACCTACATCAAAACTCATGAAGGTTGGTTATATCTGGGTGCTGTGATGGACTTATTTTC
TCGTCGTATTATTGGGTGGTCGATGGGCAGCAGAATAACCAAAGAACTGGCATTAGACGCGCTTTTAATGGCTGTATGGC
GCCGTAAGCCTACAGGTAAAGTGTTAGTCCATTCAGATCAGGGAAGCCAATATACTAGCCATGACTGGAGTGAATTTCTG
ACCGCACATGGATTGGAAGGCAGCATGAGTCGACGTGGTAGTTGCCATGATAATGCAGTGGCTGAGAGTTTCTTTCAGCT
ATTAAAGCGTGAGCGGATCAAGCGGAAAATCTATTCGACAAGAGAAGCGGCTAAAAGTGATATTTTTAATTATATCGATA
TGTTTTATAACCCTAAACGGCAGCATAGTTCCAATCATGGCTTATCACCGTTAGAGTATGAACGTCAGTATTTTAATGAG
GCTCAAAGTTGTCTAGTGAAATAG

Upstream 100 bases:

>100_bases
GAGCGCAGGTTGGATATCGAAAACCTCGTGCTCGTGGCGGAGAACAGCATGTAGTGACTCCAAATCGTTTAGAGCGGCAA
TTTAATCCATCGGCCCCAAT

Downstream 100 bases:

>100_bases
TGGCGATTCAGGCTCCCTTAGAGGTTAATAGCTTTATAAATATAAAACTCACTATGCTACTACAACTAGGATATGTACTT
AATCGCGATAGAAAATTTGT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGKVLVHSDQGSQYTSHDWSEFL
TAHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYSTREAAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYERQYFNE
AQSCLVK

Sequences:

>Translated_167_residues
MAWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGKVLVHSDQGSQYTSHDWSEFL
TAHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYSTREAAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYERQYFNE
AQSCLVK
>Mature_166_residues
AWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGKVLVHSDQGSQYTSHDWSEFLT
AHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYSTREAAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYERQYFNEA
QSCLVK

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=112, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1788405, Length=152, Percent_Identity=52.6315789473684, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1787263, Length=152, Percent_Identity=52.6315789473684, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1786753, Length=152, Percent_Identity=52.6315789473684, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1786570, Length=152, Percent_Identity=52.6315789473684, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1786490, Length=152, Percent_Identity=52.6315789473684, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1789981, Length=156, Percent_Identity=36.5384615384615, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 19444; Mature: 19313

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGK
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VLVHSDQGSQYTSHDWSEFLTAHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYST
EEEECCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
REAAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYERQYFNEAQSCLVK
HHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AWVTDITYIKTHEGWLYLGAVMDLFSRRIIGWSMGSRITKELALDALLMAVWRRKPTGK
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VLVHSDQGSQYTSHDWSEFLTAHGLEGSMSRRGSCHDNAVAESFFQLLKRERIKRKIYST
EEEECCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
REAAKSDIFNYIDMFYNPKRQHSSNHGLSPLEYERQYFNEAQSCLVK
HHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]