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The map label for this gene is rhaR [C]

Identifier: 117920770

GI number: 117920770

Start: 2803958

End: 2804908

Strand: Direct

Name: rhaR [C]

Synonym: Shewana3_2327

Alternate gene names: 117920770

Gene position: 2803958-2804908 (Clockwise)

Preceding gene: 117920766

Following gene: 117920781

Centisome position: 56.39

GC content: 42.9

Gene sequence:

>951_bases
ATGCAAGTACCAACTGTCGCTTTGATTCTCTACCCTCATTTCAGCGTGTTTCATGTCGCTGTGCCTCAAGCCGTTTTTTC
GATGCAGCCAGATGGCAAATCCATTTTTAACTTAAAGATAGTGTCAATTGATGGTAAGCCACAACACACTGACAATCGGA
TGACAGTTCAGCCTGATGGTGGATTAGAACTCGTTGAGTTGGCAGATATAGTCGTCATTCCAGGGTGGCATGACCTAGAC
AGTGCGCCTACTTCTAATATTTCTGAAGCATTGGTTAGAGCTCATGCAAGAGGAGCTATGGTCGTGGGGCTTTGCTATGG
TGCTTACGCATTAGCCTACTCAGGGCTATTAGATGAAAAAGAAGCTGCTACTCATTGGATGGCAGAGGACGATTTTACTG
TTCGTTTTCCAAATATAAAGCTAAATACGAACGCACTTTATGTTGAAAGCGACCGTGTAGTCACGTCTGCAGGTACAGCC
GCTGCTTTAGACTGCTGCTTGTATATTGTGAGGTCTTTTTATGGGACAAAAACAGCGAATAAAGTTGCGCGCATCTTGGT
TGTACCACCACACAGAGAAGGCGGTCAGGCACAATTTATTGCACAACCTATCCCAAAATCAACTCAAGATGCAGAGGTCA
ATAGGTTACTGGATTATTTACGTGAAAACCTCGACAAACAATATTCCATCGCTGATTTAGCAGATCAATTATTTATGAGT
CGTCGTACCTTTACTCGGCATTTCAACAACGCTACCGGTATGTCATTTGGAAAATGGCTTGTAAGCACTCGTCTGCAACG
TAGCCTTGAGCTTCTTGAAAGTACAAGACTTTCTGTAGAACAAGTGTCTGAAATGGTTGGTTTTCAGACTGCAACGTCAT
TTAGGAAACATTTTAATCAACGTTTTCACGTTAGCCCAAGTGCTTGGCGTAAAACATTTACGGGAAACTAA

Upstream 100 bases:

>100_bases
ATCCTCAGTATTTACGAGAGGGAATATTGACCCAAGTGACAAATATCGAAAAAATTGGGCCAAATAATGATATGACTATT
CACTTGGGAGCGCTTTGCAC

Downstream 100 bases:

>100_bases
CGATGTTAGAGCGATGTTGGAAGTAACTCTAAAATAAACTATAAACGCCGATTTTACTGAGTGTTCGATTTTTACAAGTA
CACTGTTTATCGAAACTAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MQVPTVALILYPHFSVFHVAVPQAVFSMQPDGKSIFNLKIVSIDGKPQHTDNRMTVQPDGGLELVELADIVVIPGWHDLD
SAPTSNISEALVRAHARGAMVVGLCYGAYALAYSGLLDEKEAATHWMAEDDFTVRFPNIKLNTNALYVESDRVVTSAGTA
AALDCCLYIVRSFYGTKTANKVARILVVPPHREGGQAQFIAQPIPKSTQDAEVNRLLDYLRENLDKQYSIADLADQLFMS
RRTFTRHFNNATGMSFGKWLVSTRLQRSLELLESTRLSVEQVSEMVGFQTATSFRKHFNQRFHVSPSAWRKTFTGN

Sequences:

>Translated_316_residues
MQVPTVALILYPHFSVFHVAVPQAVFSMQPDGKSIFNLKIVSIDGKPQHTDNRMTVQPDGGLELVELADIVVIPGWHDLD
SAPTSNISEALVRAHARGAMVVGLCYGAYALAYSGLLDEKEAATHWMAEDDFTVRFPNIKLNTNALYVESDRVVTSAGTA
AALDCCLYIVRSFYGTKTANKVARILVVPPHREGGQAQFIAQPIPKSTQDAEVNRLLDYLRENLDKQYSIADLADQLFMS
RRTFTRHFNNATGMSFGKWLVSTRLQRSLELLESTRLSVEQVSEMVGFQTATSFRKHFNQRFHVSPSAWRKTFTGN
>Mature_316_residues
MQVPTVALILYPHFSVFHVAVPQAVFSMQPDGKSIFNLKIVSIDGKPQHTDNRMTVQPDGGLELVELADIVVIPGWHDLD
SAPTSNISEALVRAHARGAMVVGLCYGAYALAYSGLLDEKEAATHWMAEDDFTVRFPNIKLNTNALYVESDRVVTSAGTA
AALDCCLYIVRSFYGTKTANKVARILVVPPHREGGQAQFIAQPIPKSTQDAEVNRLLDYLRENLDKQYSIADLADQLFMS
RRTFTRHFNNATGMSFGKWLVSTRLQRSLELLESTRLSVEQVSEMVGFQTATSFRKHFNQRFHVSPSAWRKTFTGN

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35256; Mature: 35256

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVPTVALILYPHFSVFHVAVPQAVFSMQPDGKSIFNLKIVSIDGKPQHTDNRMTVQPDG
CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCC
GLELVELADIVVIPGWHDLDSAPTSNISEALVRAHARGAMVVGLCYGAYALAYSGLLDEK
CEEHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCH
EAATHWMAEDDFTVRFPNIKLNTNALYVESDRVVTSAGTAAALDCCLYIVRSFYGTKTAN
HHHHHCCCCCCCEEECCCEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
KVARILVVPPHREGGQAQFIAQPIPKSTQDAEVNRLLDYLRENLDKQYSIADLADQLFMS
CEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RRTFTRHFNNATGMSFGKWLVSTRLQRSLELLESTRLSVEQVSEMVGFQTATSFRKHFNQ
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
RFHVSPSAWRKTFTGN
EECCCHHHHHHCCCCC
>Mature Secondary Structure
MQVPTVALILYPHFSVFHVAVPQAVFSMQPDGKSIFNLKIVSIDGKPQHTDNRMTVQPDG
CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCC
GLELVELADIVVIPGWHDLDSAPTSNISEALVRAHARGAMVVGLCYGAYALAYSGLLDEK
CEEHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCH
EAATHWMAEDDFTVRFPNIKLNTNALYVESDRVVTSAGTAAALDCCLYIVRSFYGTKTAN
HHHHHCCCCCCCEEECCCEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
KVARILVVPPHREGGQAQFIAQPIPKSTQDAEVNRLLDYLRENLDKQYSIADLADQLFMS
CEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RRTFTRHFNNATGMSFGKWLVSTRLQRSLELLESTRLSVEQVSEMVGFQTATSFRKHFNQ
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
RFHVSPSAWRKTFTGN
EECCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]