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The map label for this gene is yddR [H]

Identifier: 117920769

GI number: 117920769

Start: 2802927

End: 2803856

Strand: Reverse

Name: yddR [H]

Synonym: Shewana3_2326

Alternate gene names: 117920769

Gene position: 2803856-2802927 (Counterclockwise)

Preceding gene: 117920771

Following gene: 117920768

Centisome position: 56.39

GC content: 40.54

Gene sequence:

>930_bases
ATGTCTCATATTTATCAACTGCCAAAGAGATACATTATGAAAAACAAAGCTATCACCATCCTACTTACCTTAGGGCTTGC
AACCATCATAAATAGCACCAATGCATTAGCTGAATCGGCTCCAACGCTGCATTCAGAACCACAGCAGATTCACTTTCAGC
ATATCCGAAATGCAACATCTAAACTCACTTATGGTGACACAACATTCTTAATCGACCCTATGCTGGCAAAGAAAGATACC
TATCCTGGTTTTGCCGGTACTTACCGTAGTGAAATACGTATACCAATGATCGATTTACCCATGTCAGCTAAAGCTGTAAT
TGACAATGTAGACGCCGTTATTGTCACTCACACACATCTTGATCATTGGGATGATGCAGCACAAAGTGTAATTCCTAAAA
CGATGCCTTTATTTGTTCAAAATGAAGAAGATGCAAATACTATTCGCGCTCAAGGCTTTAAAGATGTGCGCGTGTTAGGC
ATTAAAACTCAGTTCAATGGCATTAGTTTAACCAAAACAGGTGGGCAGCATGGCACGGATGAAATGTATGCAATCCCAGC
GTTAGCTAAAGCACTAGGAGAGGCTATGGGTGTCATATTAGAGGCTGACAACTACAACACTGTTTATTTTGTCGGTGATA
CTATTTGGCGCGATGAAGTGGAGGATGCGTTACATAAATTTAAGCCTGAATTCGTTGTGCTTAACACTGGTGATGCTCGA
ATGGAAAATCTTAAAGGCTCAATTATCATGGGGAAAGAAGATACGGTAAGGGCTATTAAACATGCTCCTCAAGCGAACAT
TATTGCTGTGCATATGGATACGGTTAATCACGCAGCATTGACCCGTAAAGAGCTCAGGGAGTTCGTGGAAGAAAAAGGCA
TAGAAAAACAAGTATTAATTCCTGAAGATGGTGAATCGTTGAAGTTATAA

Upstream 100 bases:

>100_bases
TGCAAAGCGCTCCCAAGTGAATAGTCATATCATTATTTGGCCCAATTTTTTCGATATTTGTCACTTGGGTCAATATTCCC
TCTCGTAAATACTGAGGATA

Downstream 100 bases:

>100_bases
GTATAGCTTCTTGATTAATTAGTTGTGAGTGATAAAGGGGTAAGTGGGGACTCGAAGTCGTGAGCGAGTGAATCACTCTA
CACCAGACTGATTCACGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSHIYQLPKRYIMKNKAITILLTLGLATIINSTNALAESAPTLHSEPQQIHFQHIRNATSKLTYGDTTFLIDPMLAKKDT
YPGFAGTYRSEIRIPMIDLPMSAKAVIDNVDAVIVTHTHLDHWDDAAQSVIPKTMPLFVQNEEDANTIRAQGFKDVRVLG
IKTQFNGISLTKTGGQHGTDEMYAIPALAKALGEAMGVILEADNYNTVYFVGDTIWRDEVEDALHKFKPEFVVLNTGDAR
MENLKGSIIMGKEDTVRAIKHAPQANIIAVHMDTVNHAALTRKELREFVEEKGIEKQVLIPEDGESLKL

Sequences:

>Translated_309_residues
MSHIYQLPKRYIMKNKAITILLTLGLATIINSTNALAESAPTLHSEPQQIHFQHIRNATSKLTYGDTTFLIDPMLAKKDT
YPGFAGTYRSEIRIPMIDLPMSAKAVIDNVDAVIVTHTHLDHWDDAAQSVIPKTMPLFVQNEEDANTIRAQGFKDVRVLG
IKTQFNGISLTKTGGQHGTDEMYAIPALAKALGEAMGVILEADNYNTVYFVGDTIWRDEVEDALHKFKPEFVVLNTGDAR
MENLKGSIIMGKEDTVRAIKHAPQANIIAVHMDTVNHAALTRKELREFVEEKGIEKQVLIPEDGESLKL
>Mature_308_residues
SHIYQLPKRYIMKNKAITILLTLGLATIINSTNALAESAPTLHSEPQQIHFQHIRNATSKLTYGDTTFLIDPMLAKKDTY
PGFAGTYRSEIRIPMIDLPMSAKAVIDNVDAVIVTHTHLDHWDDAAQSVIPKTMPLFVQNEEDANTIRAQGFKDVRVLGI
KTQFNGISLTKTGGQHGTDEMYAIPALAKALGEAMGVILEADNYNTVYFVGDTIWRDEVEDALHKFKPEFVVLNTGDARM
ENLKGSIIMGKEDTVRAIKHAPQANIIAVHMDTVNHAALTRKELREFVEEKGIEKQVLIPEDGESLKL

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 34388; Mature: 34257

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHIYQLPKRYIMKNKAITILLTLGLATIINSTNALAESAPTLHSEPQQIHFQHIRNATS
CCHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
KLTYGDTTFLIDPMLAKKDTYPGFAGTYRSEIRIPMIDLPMSAKAVIDNVDAVIVTHTHL
CEECCCEEEEECCHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEEECCC
DHWDDAAQSVIPKTMPLFVQNEEDANTIRAQGFKDVRVLGIKTQFNGISLTKTGGQHGTD
CCHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCEEEEEEEEECCCEEEEECCCCCCCC
EMYAIPALAKALGEAMGVILEADNYNTVYFVGDTIWRDEVEDALHKFKPEFVVLNTGDAR
CHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHH
MENLKGSIIMGKEDTVRAIKHAPQANIIAVHMDTVNHAALTRKELREFVEEKGIEKQVLI
HHHCCCCEEECCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE
PEDGESLKL
CCCCCCCCC
>Mature Secondary Structure 
SHIYQLPKRYIMKNKAITILLTLGLATIINSTNALAESAPTLHSEPQQIHFQHIRNATS
CHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
KLTYGDTTFLIDPMLAKKDTYPGFAGTYRSEIRIPMIDLPMSAKAVIDNVDAVIVTHTHL
CEECCCEEEEECCHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEEECCC
DHWDDAAQSVIPKTMPLFVQNEEDANTIRAQGFKDVRVLGIKTQFNGISLTKTGGQHGTD
CCHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCEEEEEEEEECCCEEEEECCCCCCCC
EMYAIPALAKALGEAMGVILEADNYNTVYFVGDTIWRDEVEDALHKFKPEFVVLNTGDAR
CHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHH
MENLKGSIIMGKEDTVRAIKHAPQANIIAVHMDTVNHAALTRKELREFVEEKGIEKQVLI
HHHCCCCEEECCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE
PEDGESLKL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]